Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   JMX06_RS04280 Genome accession   NZ_LR890536
Coordinates   901067..902299 (-) Length   410 a.a.
NCBI ID   WP_024946588.1    Uniprot ID   -
Organism   Escherichia coli strain MSB1_8B isolate MSB1_8B     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 896067..907299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX06_RS04270 - 899205..899882 (-) 678 WP_024946589.1 ABC transporter ATP-binding protein -
  JMX06_RS04275 - 899879..900658 (-) 780 WP_032152072.1 ABC transporter permease -
  JMX06_RS04280 kpsS 901067..902299 (-) 1233 WP_024946588.1 capsular biosynthesis protein Regulator
  JMX06_RS04285 - 902334..904361 (-) 2028 WP_032333763.1 capsular polysaccharide biosynthesis protein -
  JMX06_RS04290 kdsB 904358..905098 (-) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JMX06_RS04295 - 905108..906784 (-) 1677 WP_001578965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48752.22 Da        Isoelectric Point: 10.0140

>NTDB_id=1014518 JMX06_RS04280 WP_024946588.1 901067..902299(-) (kpsS) [Escherichia coli strain MSB1_8B isolate MSB1_8B]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPEWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRREFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNDLDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGESQLHCDTIT
LEINSALNNK

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1014518 JMX06_RS04280 WP_024946588.1 901067..902299(-) (kpsS) [Escherichia coli strain MSB1_8B isolate MSB1_8B]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGAATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGACCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAATTTAAAACCTTCAACGATG
AAACGTATTGGCCATGCAATGTGGTATTACCTGATGGGCTGGCATTACCGTCGTGAGTTTCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGACCTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAAATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
GAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGGGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCAAAAGCGGTGGTA
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTTAAGACACAGGTTAATGGGGTTTATTATGGGGAGTCACAGTTACACTGCGACACTATTACA
TTAGAAATCAATTCTGCATTGAACAATAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

94.878

0.38

Multiple sequence alignment