Detailed information NTG1014489

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMW57_RS19750
• Genome accession: NZ_LR890508
• Coordinates: 4092123..4093115 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MSB1_9I isolate MSB1_9I
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4087123..4098115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMW57_RS19720	ispD	4087184..4087894 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JMW57_RS19725	ispF	4087894..4088373 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMW57_RS19730	truD	4088370..4089419 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JMW57_RS19735	surE	4089400..4090161 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JMW57_RS19740	pcm	4090155..4090781 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMW57_RS19745	nlpD	4090966..4092060 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JMW57_RS19750	rpoS	4092123..4093115 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMW57_RS19755	ygbN	4093209..4094573 (-)	1365	WP_000104441.1	GntP family transporter	-
JMW57_RS19760	ygbM	4094662..4095438 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JMW57_RS19765	ygbL	4095443..4096081 (-)	639	WP_001278994.1	aldolase	-
JMW57_RS19770	otnK	4096078..4097340 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1014489 JMW57_RS19750 WP_000081550.1 4092123..4093115(+) (rpoS) [Escherichia coli strain MSB1_9I isolate MSB1_9I]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1014489 JMW57_RS19750 WP_000081550.1 4092123..4093115(+) (rpoS) [Escherichia coli strain MSB1_9I isolate MSB1_9I]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715