Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABWX08_RS10140 | Genome accession | NZ_CP159526 |
| Coordinates | 2149086..2149466 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain NAB01B-R9 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2144086..2154466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWX08_RS10110 (ABWX08_10110) | tadA | 2144204..2144707 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABWX08_RS10115 (ABWX08_10115) | - | 2144714..2145838 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABWX08_RS10120 (ABWX08_10120) | ung | 2145835..2146548 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABWX08_RS10125 (ABWX08_10125) | - | 2146599..2147195 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABWX08_RS10130 (ABWX08_10130) | gspK | 2147426..2148385 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABWX08_RS10135 (ABWX08_10135) | xcpW | 2148385..2149086 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABWX08_RS10140 (ABWX08_10140) | xcpV | 2149086..2149466 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABWX08_RS10145 (ABWX08_10145) | - | 2149456..2150010 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABWX08_RS10150 (ABWX08_10150) | - | 2150020..2150628 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABWX08_RS10155 (ABWX08_10155) | - | 2150666..2151439 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABWX08_RS10160 (ABWX08_10160) | - | 2151457..2151798 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABWX08_RS10165 (ABWX08_10165) | - | 2151810..2152790 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABWX08_RS10170 (ABWX08_10170) | kdsB | 2152802..2153563 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1014420 ABWX08_RS10140 WP_000836911.1 2149086..2149466(-) (xcpV) [Acinetobacter baumannii strain NAB01B-R9]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1014420 ABWX08_RS10140 WP_000836911.1 2149086..2149466(-) (xcpV) [Acinetobacter baumannii strain NAB01B-R9]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |