Detailed information NTG1014237

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: JMW09_RS23615
• Genome accession: NZ_LR890405
• Coordinates: 4936457..4937482 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain MSB1_7C isolate MSB1_7C
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4931457..4942482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMW09_RS23595	metJ	4932642..4932959 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
JMW09_RS23600	yiiX	4933019..4933627 (+)	609	WP_000702318.1	YiiX family permuted papain-like enzyme	-
JMW09_RS23605	rpmE	4933688..4933900 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
JMW09_RS23610	priA	4934103..4936301 (+)	2199	WP_001309891.1	primosomal protein N'	Machinery gene
JMW09_RS23615	cytR	4936457..4937482 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
JMW09_RS23620	ftsN	4937574..4938533 (+)	960	WP_000068844.1	cell division protein FtsN	-
JMW09_RS23625	hslV	4938626..4939156 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
JMW09_RS23630	hslU	4939166..4940497 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
JMW09_RS23635	menA	4940564..4941490 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
JMW09_RS23640	rraA	4941583..4942068 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1014237 JMW09_RS23615 WP_000644904.1 4936457..4937482(+) (cytR) [Escherichia coli strain MSB1_7C isolate MSB1_7C]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1014237 JMW09_RS23615 WP_000644904.1 4936457..4937482(+) (cytR) [Escherichia coli strain MSB1_7C isolate MSB1_7C]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGACGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCGCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628