Detailed information NTG1014185

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMW09_RS05700
• Genome accession: NZ_LR890405
• Coordinates: 1198366..1199358 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MSB1_7C isolate MSB1_7C
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1193366..1204358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMW09_RS05670	ispD	1193427..1194137 (+)	711	WP_000246141.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JMW09_RS05675	ispF	1194137..1194616 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMW09_RS05680	truD	1194613..1195662 (+)	1050	WP_000568953.1	tRNA pseudouridine(13) synthase TruD	-
JMW09_RS05685	surE	1195643..1196404 (+)	762	WP_001305779.1	5'/3'-nucleotidase SurE	-
JMW09_RS05690	pcm	1196398..1197024 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMW09_RS05695	nlpD	1197164..1198303 (+)	1140	WP_001272592.1	murein hydrolase activator NlpD	-
JMW09_RS05700	rpoS	1198366..1199358 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMW09_RS05705	-	1199479..1199886 (-)	408	WP_001208065.1	MarR family transcriptional regulator	-
JMW09_RS05710	-	1200033..1200626 (+)	594	WP_001237176.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
JMW09_RS05715	-	1200626..1202053 (+)	1428	WP_000863184.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
JMW09_RS05720	-	1202064..1202300 (+)	237	WP_000562983.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
JMW09_RS05725	pphB	1202342..1202998 (-)	657	WP_001139307.1	protein-serine/threonine phosphatase	-
JMW09_RS05730	-	1203023..1203886 (-)	864	WP_001223109.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1014185 JMW09_RS05700 WP_000081550.1 1198366..1199358(+) (rpoS) [Escherichia coli strain MSB1_7C isolate MSB1_7C]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1014185 JMW09_RS05700 WP_000081550.1 1198366..1199358(+) (rpoS) [Escherichia coli strain MSB1_7C isolate MSB1_7C]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715