Detailed information NTG1014102

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMW03_RS05410
• Genome accession: NZ_LR890349
• Coordinates: 1132963..1133955 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MSB1_9D isolate MSB1_9D
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1127963..1138955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMW03_RS05380	ispD	1128024..1128734 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JMW03_RS05385	ispF	1128734..1129213 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMW03_RS05390	truD	1129210..1130259 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JMW03_RS05395	surE	1130240..1131001 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JMW03_RS05400	pcm	1130995..1131621 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMW03_RS05405	nlpD	1131806..1132900 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JMW03_RS05410	rpoS	1132963..1133955 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMW03_RS05415	ygbN	1134049..1135413 (-)	1365	WP_000104441.1	GntP family transporter	-
JMW03_RS05420	ygbM	1135502..1136278 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JMW03_RS05425	ygbL	1136283..1136921 (-)	639	WP_001278994.1	aldolase	-
JMW03_RS05430	otnK	1136918..1138180 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1014102 JMW03_RS05410 WP_000081550.1 1132963..1133955(+) (rpoS) [Escherichia coli strain MSB1_9D isolate MSB1_9D]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1014102 JMW03_RS05410 WP_000081550.1 1132963..1133955(+) (rpoS) [Escherichia coli strain MSB1_9D isolate MSB1_9D]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCTTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715