Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   JMW07_RS16005 Genome accession   NZ_LR890334
Coordinates   3341402..3342394 (+) Length   330 a.a.
NCBI ID   WP_022646319.1    Uniprot ID   -
Organism   Escherichia coli strain MINF_9A isolate MINF_9A     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3336402..3347394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW07_RS15980 rbsD 3336526..3336945 (+) 420 WP_000715936.1 D-ribose pyranase -
  JMW07_RS15985 rbsA 3336953..3338458 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  JMW07_RS15990 rbsC 3338463..3339428 (+) 966 WP_022646318.1 ribose ABC transporter permease -
  JMW07_RS15995 rbsB 3339453..3340343 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  JMW07_RS16000 rbsK 3340469..3341398 (+) 930 WP_001361791.1 ribokinase -
  JMW07_RS16005 cytR 3341402..3342394 (+) 993 WP_022646319.1 ribose operon transcriptional repressor RbsR Regulator
  JMW07_RS16010 mdtD 3342360..3343787 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  JMW07_RS16015 yieP 3343810..3344502 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36597.88 Da        Isoelectric Point: 5.2098

>NTDB_id=1014047 JMW07_RS16005 WP_022646319.1 3341402..3342394(+) (cytR) [Escherichia coli strain MINF_9A isolate MINF_9A]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVDAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1014047 JMW07_RS16005 WP_022646319.1 3341402..3342394(+) (cytR) [Escherichia coli strain MINF_9A isolate MINF_9A]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGATGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment