Detailed information NTG1014022

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMW07_RS10120
• Genome accession: NZ_LR890334
• Coordinates: 2092717..2093709 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MINF_9A isolate MINF_9A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2087717..2098709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMW07_RS10095	pphB	2089077..2089733 (+)	657	WP_022646027.1	protein-serine/threonine phosphatase	-
JMW07_RS10100	-	2089774..2090010 (-)	237	WP_000562980.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
JMW07_RS10105	-	2090021..2091448 (-)	1428	WP_000863202.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
JMW07_RS10110	-	2091448..2092042 (-)	595	Protein_2009	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
JMW07_RS10115	-	2092189..2092596 (+)	408	WP_001208067.1	MarR family transcriptional regulator	-
JMW07_RS10120	rpoS	2092717..2093709 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMW07_RS10125	nlpD	2093772..2094866 (-)	1095	WP_306305266.1	murein hydrolase activator NlpD	-
JMW07_RS10130	pcm	2095051..2095677 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMW07_RS10135	surE	2095671..2096432 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JMW07_RS10140	truD	2096413..2097462 (-)	1050	WP_022646031.1	tRNA pseudouridine(13) synthase TruD	-
JMW07_RS10145	ispF	2097459..2097938 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMW07_RS10150	ispD	2097938..2098648 (-)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1014022 JMW07_RS10120 WP_000081550.1 2092717..2093709(-) (rpoS) [Escherichia coli strain MINF_9A isolate MINF_9A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1014022 JMW07_RS10120 WP_000081550.1 2092717..2093709(-) (rpoS) [Escherichia coli strain MINF_9A isolate MINF_9A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715