Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   JMV91_RS00300 Genome accession   NZ_LR890326
Coordinates   49850..50875 (-) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain MINF_1A isolate MINF_1A     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 44850..55875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV91_RS00275 rraA 45264..45749 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  JMV91_RS00280 menA 45842..46768 (-) 927 WP_001305044.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  JMV91_RS00285 hslU 46835..48166 (-) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  JMV91_RS00290 hslV 48176..48706 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  JMV91_RS00295 ftsN 48799..49758 (-) 960 WP_000068834.1 cell division protein FtsN -
  JMV91_RS00300 cytR 49850..50875 (-) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  JMV91_RS00305 priA 51031..53229 (-) 2199 WP_012311784.1 primosomal protein N' Machinery gene
  JMV91_RS00310 rpmE 53432..53644 (+) 213 WP_000710769.1 50S ribosomal protein L31 -
  JMV91_RS00315 yiiX 53705..54313 (-) 609 WP_000702304.1 YiiX family permuted papain-like enzyme -
  JMV91_RS00320 metJ 54373..54690 (-) 318 WP_000852812.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=1013909 JMV91_RS00300 WP_000644904.1 49850..50875(-) (cytR) [Escherichia coli strain MINF_1A isolate MINF_1A]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=1013909 JMV91_RS00300 WP_000644904.1 49850..50875(-) (cytR) [Escherichia coli strain MINF_1A isolate MINF_1A]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACCGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAGCACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628

Multiple sequence alignment