Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AADW08_RS07220 Genome accession   NZ_CP159489
Coordinates   1397200..1398570 (-) Length   456 a.a.
NCBI ID   WP_353894975.1    Uniprot ID   -
Organism   Pediococcus pentosaceus strain PP04sPP04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1392200..1403570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADW08_RS07200 - 1392496..1392909 (-) 414 WP_023440688.1 Mini-ribonuclease 3 -
  AADW08_RS07205 cysS 1392902..1394314 (-) 1413 WP_061811964.1 cysteine--tRNA ligase -
  AADW08_RS07210 gltX 1394495..1395982 (-) 1488 WP_002833250.1 glutamate--tRNA ligase -
  AADW08_RS07215 - 1396052..1397182 (-) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  AADW08_RS07220 radA 1397200..1398570 (-) 1371 WP_353894975.1 DNA repair protein RadA Machinery gene
  AADW08_RS07225 - 1398670..1399203 (-) 534 WP_195751650.1 dUTP diphosphatase -
  AADW08_RS07230 - 1399340..1399669 (+) 330 WP_002833246.1 GNAT family N-acetyltransferase -
  AADW08_RS07235 rpiA 1399673..1400359 (+) 687 WP_002833245.1 ribose-5-phosphate isomerase RpiA -
  AADW08_RS07240 - 1400429..1401775 (+) 1347 WP_094104311.1 C1 family peptidase -
  AADW08_RS07245 - 1401851..1402231 (-) 381 WP_002833243.1 helix-turn-helix domain-containing protein -
  AADW08_RS07250 - 1402295..1403482 (-) 1188 WP_061811966.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50330.77 Da        Isoelectric Point: 6.7620

>NTDB_id=1013891 AADW08_RS07220 WP_353894975.1 1397200..1398570(-) (radA) [Pediococcus pentosaceus strain PP04sPP04]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAERLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGGVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1013891 AADW08_RS07220 WP_353894975.1 1397200..1398570(-) (radA) [Pediococcus pentosaceus strain PP04sPP04]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGGCGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAATTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGAGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGTGTAGTAGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGAAAGTCGACCCTATT
ATTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCGAACGTTTACAGGTTAACAGTGAACGTTTTTACTTATACCCTGAAACTGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTGGTGTATCGCAAATTCGAGAAATTACAGCTGAATTAATGCAAATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGCGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
GATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTCGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTAATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATCGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGAATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
AAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.593

99.781

0.664
  radA Streptococcus mitis NCTC 12261

66.593

99.781

0.664
  radA Streptococcus mitis SK321

66.593

99.781

0.664
  radA Streptococcus pneumoniae TIGR4

66.593

99.781

0.664
  radA Streptococcus pneumoniae D39

66.593

99.781

0.664
  radA Streptococcus pneumoniae R6

66.593

99.781

0.664
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

100

0.649

Multiple sequence alignment