Detailed information NTG0101388

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPOKI828_RS02440
• Genome accession: NZ_CP006826
• Coordinates: 500655..501857 (-)
• Length: 400 a.a.
• NCBI ID: WP_025222674.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki828
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 495655..506857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI828_RS02415 (HPOKI828_02525)	-	495737..496255 (-)	519	WP_025222671.1	hypothetical protein	-
HPOKI828_RS02420 (HPOKI828_02530)	-	496252..497196 (-)	945	WP_025222672.1	ATPase, T2SS/T4P/T4SS family	-
HPOKI828_RS02425 (HPOKI828_02535)	-	497201..497473 (-)	273	WP_000883379.1	hypothetical protein	-
HPOKI828_RS02430 (HPOKI828_02540)	-	497491..498466 (-)	976	Protein_478	hypothetical protein	-
HPOKI828_RS02435 (HPOKI828_02545)	-	498479..500671 (-)	2193	WP_025222673.1	hypothetical protein	-
HPOKI828_RS02440 (HPOKI828_02550)	comB10	500655..501857 (-)	1203	WP_025222674.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI828_RS02445 (HPOKI828_02555)	-	501854..503521 (-)	1668	WP_025222675.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HPOKI828_RS02450 (HPOKI828_02560)	-	503518..504634 (-)	1117	Protein_482	VirB8/TrbF family protein	-
HPOKI828_RS02455 (HPOKI828_02565)	-	504627..504761 (-)	135	WP_000738749.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44694.32 Da
• Isoelectric Point: 9.9914

>NTDB_id=101388 HPOKI828_RS02440 WP_025222674.1 500655..501857(-) (comB10) [Helicobacter pylori oki828]
MNKSLLKKIGLVIGGFGALMALGLLANKGSDNNNKEEIFQVNESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMPRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=101388 HPOKI828_RS02440 WP_025222674.1 500655..501857(-) (comB10) [Helicobacter pylori oki828]
ATGAATAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAGACAATAACAATAAAGAAGAAATCTTTCAAGTAAATGAGAGTAAATTCCCACTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATTGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCCAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTCCTAGCGGAGTTTTTTAAAGAGAAAAAACCGCTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.266	99.5	0.53