Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABNK31_RS00775 Genome accession   NZ_CP159486
Coordinates   176777..178144 (-) Length   455 a.a.
NCBI ID   WP_418893873.1    Uniprot ID   -
Organism   Limibacterium fermenti strain me31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 171777..183144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNK31_RS00750 (ABNK31_00750) - 172380..173687 (+) 1308 WP_418893869.1 ABC transporter permease -
  ABNK31_RS00755 (ABNK31_00755) dapF 173855..174688 (+) 834 WP_418893870.1 diaminopimelate epimerase -
  ABNK31_RS00760 (ABNK31_00760) - 174813..176033 (+) 1221 WP_418893871.1 LL-diaminopimelate aminotransferase -
  ABNK31_RS00765 (ABNK31_00765) - 176125..176463 (+) 339 WP_418893872.1 hypothetical protein -
  ABNK31_RS00775 (ABNK31_00775) radA 176777..178144 (-) 1368 WP_418893873.1 DNA repair protein RadA Machinery gene
  ABNK31_RS00780 (ABNK31_00780) - 178154..178435 (-) 282 WP_418893874.1 Txe/YoeB family addiction module toxin -
  ABNK31_RS00785 (ABNK31_00785) - 178417..178656 (-) 240 WP_418893875.1 prevent-host-death protein -
  ABNK31_RS00790 (ABNK31_00790) - 178782..180950 (+) 2169 WP_418893876.1 Tex family protein -
  ABNK31_RS00795 (ABNK31_00795) ybaK 180965..181441 (+) 477 WP_418893877.1 Cys-tRNA(Pro) deacylase -
  ABNK31_RS00800 (ABNK31_00800) - 181455..181661 (-) 207 WP_418893878.1 hypothetical protein -
  ABNK31_RS00805 (ABNK31_00805) - 181713..182078 (-) 366 WP_418893879.1 Crp/Fnr family transcriptional regulator -
  ABNK31_RS00810 (ABNK31_00810) - 182361..182774 (+) 414 WP_418893880.1 hypothetical protein -
  ABNK31_RS00815 (ABNK31_00815) - 182758..182904 (+) 147 WP_418893881.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49710.23 Da        Isoelectric Point: 6.6030

>NTDB_id=1013864 ABNK31_RS00775 WP_418893873.1 176777..178144(-) (radA) [Limibacterium fermenti strain me31]
MAKLKTVYFCSNCGYESPKWMGKCPSCGEWGTFVEELVQKNSASKQADTRSFDSVQSQPLPLKDIKADEEPRIDMLDGEL
NRVLGGGLVPASLVLIGGEPGIGKSTLVLQTVLKLSHIRSLYVSGEESARQLKLRADRIGLENDQCLIVCETNLDRIFTH
IQNTSPQLVIIDSIQTVYSDAMESSPGSISQVRECAATILKFAKQSGIPVILIGHITKEGSIAGPKVLEHIVDTVLQFEG
DQHYMYRILRSIKNRFGSTSELGIYEMNRSGLREVTNPSELLLTQNHEGLSGVAISAAIEGVRPFLIETQALVSTAAYGT
PQRSATGFDIRRMNMLLAVLEKRAGFKLGQKDVFLNIAGGLRVNDPGMDLSVICAVLSSSLDISIDGDTCLTGEVGLSGE
IRPVNRIEQRIMEAEKLGFSRILVPANNLKGFNAKVHIKIEAVRKVEDAFRALFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1013864 ABNK31_RS00775 WP_418893873.1 176777..178144(-) (radA) [Limibacterium fermenti strain me31]
ATGGCAAAACTGAAAACGGTTTATTTCTGCAGCAATTGCGGGTACGAATCACCGAAATGGATGGGAAAATGCCCTTCCTG
CGGCGAATGGGGAACATTTGTGGAGGAACTGGTACAAAAAAACAGCGCGTCGAAACAAGCCGACACCCGCTCGTTCGACT
CGGTACAGAGCCAACCTCTCCCGCTAAAGGATATAAAAGCCGATGAAGAGCCGCGCATCGATATGTTGGACGGAGAGCTC
AACCGGGTGTTGGGCGGAGGACTGGTACCAGCCTCACTGGTATTGATCGGAGGCGAGCCTGGCATCGGCAAGTCGACGCT
CGTACTTCAAACGGTACTGAAACTAAGTCATATCCGAAGCCTGTATGTTTCGGGCGAAGAAAGCGCGCGGCAACTCAAAC
TGCGTGCCGACCGTATCGGCTTGGAGAACGATCAATGCCTGATTGTGTGTGAAACCAATCTCGACCGTATTTTTACCCAT
ATCCAAAACACCTCTCCGCAATTAGTGATTATCGACTCGATCCAAACGGTGTATAGCGACGCCATGGAATCGTCACCCGG
AAGCATCTCGCAGGTACGGGAGTGCGCCGCAACGATTCTCAAATTCGCCAAACAGTCGGGCATACCGGTCATTCTTATCG
GACATATTACGAAAGAAGGAAGCATCGCCGGGCCAAAGGTCTTGGAGCATATCGTCGACACGGTTTTGCAGTTCGAAGGC
GACCAACACTATATGTACCGGATCTTACGAAGCATCAAAAACCGCTTCGGAAGCACTTCGGAATTGGGTATCTATGAGAT
GAACCGGTCGGGGCTGCGCGAAGTAACCAACCCTTCGGAGTTACTGCTTACGCAAAATCACGAAGGATTAAGCGGTGTAG
CCATTTCGGCCGCTATCGAAGGGGTACGCCCCTTCCTTATAGAGACGCAAGCGCTGGTGAGCACGGCAGCTTACGGCACG
CCGCAACGATCGGCCACCGGATTCGATATTCGACGGATGAACATGTTACTGGCCGTATTGGAAAAGCGCGCCGGTTTTAA
ATTGGGACAGAAAGATGTCTTTTTGAATATTGCCGGTGGATTACGGGTGAATGATCCGGGAATGGATTTATCGGTCATTT
GCGCCGTCTTGTCTTCCAGTTTGGATATTTCCATCGATGGAGATACCTGTTTGACGGGCGAAGTGGGACTTTCGGGAGAG
ATTCGTCCGGTAAACCGCATCGAGCAACGTATTATGGAAGCCGAAAAGTTAGGTTTTTCGCGTATTCTTGTACCGGCAAA
TAACCTGAAAGGATTCAATGCGAAAGTGCATATAAAAATAGAAGCGGTTCGAAAAGTCGAAGATGCTTTCCGAGCCCTAT
TTTCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)

AAA domain (AAA_25)

(80-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.982

99.78

0.519
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466

Multiple sequence alignment