Detailed information
Bioinformatically predicted
Overview
| Name | pepF | Type | Regulator |
| Locus tag | ABVR74_RS03300 | Genome accession | NZ_CP159484 |
| Coordinates | 627004..628809 (+) | Length | 601 a.a. |
| NCBI ID | WP_353891788.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain CBA3648 | ||
| Function | degradation of XIP; competence shut-off (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 593412..632988 | 627004..628809 | within | 0 |
Gene organization within MGE regions
Location: 593412..632988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVR74_RS03115 (ABVR74_03115) | - | 593667..594542 (+) | 876 | WP_003132784.1 | sensor histidine kinase | - |
| ABVR74_RS03120 (ABVR74_03120) | - | 594545..595609 (+) | 1065 | WP_353891775.1 | prephenate dehydrogenase | - |
| ABVR74_RS03125 (ABVR74_03125) | aroA | 595730..597022 (+) | 1293 | WP_098384077.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| ABVR74_RS03130 (ABVR74_03130) | - | 597046..597534 (+) | 489 | WP_017864896.1 | shikimate kinase | - |
| ABVR74_RS03135 (ABVR74_03135) | pheA | 597536..598375 (+) | 840 | WP_023188548.1 | prephenate dehydratase | - |
| ABVR74_RS03140 (ABVR74_03140) | - | 598378..598971 (+) | 594 | WP_010906114.1 | histidine phosphatase family protein | - |
| ABVR74_RS03145 (ABVR74_03145) | - | 598968..601472 (+) | 2505 | WP_353891776.1 | ATP-dependent RecD-like DNA helicase | - |
| ABVR74_RS03150 (ABVR74_03150) | rpsT | 601566..601799 (-) | 234 | WP_010906113.1 | 30S ribosomal protein S20 | - |
| ABVR74_RS03155 (ABVR74_03155) | - | 602128..602640 (+) | 513 | WP_003132795.1 | HD domain-containing protein | - |
| ABVR74_RS03160 (ABVR74_03160) | - | 602796..603710 (+) | 915 | WP_015426912.1 | diacylglycerol kinase family protein | - |
| ABVR74_RS03165 (ABVR74_03165) | - | 603831..605042 (-) | 1212 | WP_353891777.1 | site-specific integrase | - |
| ABVR74_RS03170 (ABVR74_03170) | - | 605106..605645 (-) | 540 | WP_180707552.1 | helix-turn-helix transcriptional regulator | - |
| ABVR74_RS03175 (ABVR74_03175) | - | 605736..605978 (+) | 243 | WP_095345354.1 | hypothetical protein | - |
| ABVR74_RS03180 (ABVR74_03180) | - | 606253..606423 (+) | 171 | WP_095345355.1 | DUF1655 domain-containing protein | - |
| ABVR74_RS03185 (ABVR74_03185) | - | 606425..606679 (+) | 255 | WP_058217200.1 | hypothetical protein | - |
| ABVR74_RS03190 (ABVR74_03190) | - | 606825..607094 (+) | 270 | WP_353891778.1 | hypothetical protein | - |
| ABVR74_RS03195 (ABVR74_03195) | - | 607104..608801 (+) | 1698 | WP_353891779.1 | hypothetical protein | - |
| ABVR74_RS03200 (ABVR74_03200) | - | 609163..609495 (+) | 333 | WP_353891780.1 | DUF771 domain-containing protein | - |
| ABVR74_RS03205 (ABVR74_03205) | - | 609618..609806 (+) | 189 | WP_289452477.1 | hypothetical protein | - |
| ABVR74_RS03210 (ABVR74_03210) | - | 609974..610159 (+) | 186 | WP_353891781.1 | hypothetical protein | - |
| ABVR74_RS03215 (ABVR74_03215) | - | 610173..610388 (+) | 216 | WP_270219714.1 | hypothetical protein | - |
| ABVR74_RS03220 (ABVR74_03220) | - | 610395..610904 (+) | 510 | WP_353891782.1 | HK97 family phage prohead protease | - |
| ABVR74_RS03225 (ABVR74_03225) | - | 610920..611249 (+) | 330 | WP_353891783.1 | hypothetical protein | - |
| ABVR74_RS03230 (ABVR74_03230) | - | 611367..611507 (+) | 141 | Protein_607 | HNH endonuclease | - |
| ABVR74_RS03235 (ABVR74_03235) | - | 611941..612237 (-) | 297 | WP_353891784.1 | hypothetical protein | - |
| ABVR74_RS03240 (ABVR74_03240) | - | 612558..613985 (+) | 1428 | WP_353891785.1 | HEPN domain-containing protein | - |
| ABVR74_RS03245 (ABVR74_03245) | - | 614340..615530 (+) | 1191 | WP_353891786.1 | hypothetical protein | - |
| ABVR74_RS03250 (ABVR74_03250) | - | 615793..616833 (+) | 1041 | WP_353891787.1 | putative phage abortive infection protein | - |
| ABVR74_RS03255 (ABVR74_03255) | - | 617121..617834 (+) | 714 | WP_023188576.1 | Bax inhibitor-1/YccA family protein | - |
| ABVR74_RS03260 (ABVR74_03260) | - | 617908..618591 (-) | 684 | WP_003130398.1 | lactate utilization protein C | - |
| ABVR74_RS03265 (ABVR74_03265) | - | 618594..620066 (-) | 1473 | WP_003130400.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| ABVR74_RS03270 (ABVR74_03270) | - | 620076..620846 (-) | 771 | WP_039115804.1 | (Fe-S)-binding protein | - |
| ABVR74_RS03275 (ABVR74_03275) | - | 621027..621863 (-) | 837 | WP_003130402.1 | Cof-type HAD-IIB family hydrolase | - |
| ABVR74_RS03280 (ABVR74_03280) | - | 622170..623591 (+) | 1422 | WP_012898314.1 | NCS2 family permease | - |
| ABVR74_RS03285 (ABVR74_03285) | - | 623783..624631 (+) | 849 | WP_010906111.1 | alpha/beta hydrolase | - |
| ABVR74_RS03290 (ABVR74_03290) | - | 624793..625878 (+) | 1086 | WP_012898312.1 | YdcF family protein | - |
| ABVR74_RS03295 (ABVR74_03295) | coiA | 625952..626941 (+) | 990 | WP_012898311.1 | competence protein CoiA | Machinery gene |
| ABVR74_RS03300 (ABVR74_03300) | pepF | 627004..628809 (+) | 1806 | WP_353891788.1 | oligoendopeptidase F | Regulator |
| ABVR74_RS03305 (ABVR74_03305) | - | 628812..629495 (+) | 684 | WP_010906108.1 | O-methyltransferase | - |
| ABVR74_RS03310 (ABVR74_03310) | - | 629649..630575 (+) | 927 | WP_010906107.1 | peptidyl-prolyl cis-trans isomerase | - |
Sequence
Protein
Download Length: 601 a.a. Molecular weight: 69905.88 Da Isoelectric Point: 5.0100
>NTDB_id=1013819 ABVR74_RS03300 WP_353891788.1 627004..628809(+) (pepF) [Lactococcus lactis subsp. lactis strain CBA3648]
MAKNRNEIPEKLTWDLTTIYKTDKEWEAELTRIKSELSLVEETDPGHLLDSAESLLIITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELKKLKNYDHMFERLFAKKAHILSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMIQLTHGNYSSLMESKNRGLRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGITDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKGKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKLVHGSDEDRQKYLEYLKAGSSGYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL
MAKNRNEIPEKLTWDLTTIYKTDKEWEAELTRIKSELSLVEETDPGHLLDSAESLLIITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELKKLKNYDHMFERLFAKKAHILSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMIQLTHGNYSSLMESKNRGLRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGITDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKGKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKLVHGSDEDRQKYLEYLKAGSSGYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL
Nucleotide
Download Length: 1806 bp
>NTDB_id=1013819 ABVR74_RS03300 WP_353891788.1 627004..628809(+) (pepF) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGGCTAAGAACAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAAAGAATGGGA
AGCAGAGTTAACTAGAATAAAAAGTGAACTTTCACTCGTTGAAGAGACAGACCCCGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGATAATTACCGAAAAAATGTTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCTAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTCTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAGTTTTTGAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAGCTTAAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCAAAAAAAGCTCATATTCTTAGTCAAAAAGAGGAAAAGTTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAAATTTTTGATAATGCGGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGATCCAACTCACGCATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGGGGACTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACTAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTACCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTACTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGGAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTAA
ATTGGCAAGAAACGTTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AACCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACTACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAGGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGCGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAACTTGTTCATGGTTCAGATGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGGTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTTCATCTTTAA
ATGGCTAAGAACAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAAAGAATGGGA
AGCAGAGTTAACTAGAATAAAAAGTGAACTTTCACTCGTTGAAGAGACAGACCCCGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGATAATTACCGAAAAAATGTTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCTAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTCTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAGTTTTTGAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAGCTTAAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCAAAAAAAGCTCATATTCTTAGTCAAAAAGAGGAAAAGTTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAAATTTTTGATAATGCGGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGATCCAACTCACGCATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGGGGACTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACTAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTACCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTACTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGGAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTAA
ATTGGCAAGAAACGTTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AACCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACTACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAGGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGCGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAACTTGTTCATGGTTCAGATGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGGTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTTCATCTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pepF | Streptococcus salivarius strain HSISS4 |
64.463 |
100 |
0.649 |