Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABWH99_RS03965 Genome accession   NZ_CP159481
Coordinates   934333..935709 (-) Length   458 a.a.
NCBI ID   WP_375585012.1    Uniprot ID   -
Organism   Cyclobacterium xiamenense strain ac3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 929333..940709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWH99_RS03945 (ABWH99_03940) - 929775..930836 (-) 1062 WP_375585008.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  ABWH99_RS03950 (ABWH99_03945) - 930833..931867 (-) 1035 WP_375585009.1 mandelate racemase/muconate lactonizing enzyme family protein -
  ABWH99_RS03955 (ABWH99_03950) - 931985..933463 (+) 1479 WP_375585010.1 M14 metallopeptidase family protein -
  ABWH99_RS03960 (ABWH99_03955) - 933596..934327 (+) 732 WP_375585011.1 class I SAM-dependent methyltransferase -
  ABWH99_RS03965 (ABWH99_03960) radA 934333..935709 (-) 1377 WP_375585012.1 DNA repair protein RadA Machinery gene
  ABWH99_RS03970 (ABWH99_03965) polA 935760..938567 (-) 2808 WP_375585013.1 DNA polymerase I -
  ABWH99_RS03975 (ABWH99_03970) - 939014..939322 (+) 309 WP_375585014.1 hypothetical protein -
  ABWH99_RS03980 (ABWH99_03975) - 939822..940226 (-) 405 WP_375585015.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50466.24 Da        Isoelectric Point: 6.6903

>NTDB_id=1013772 ABWH99_RS03965 WP_375585012.1 934333..935709(-) (radA) [Cyclobacterium xiamenense strain ac3]
MAKVKTAFFCQNCGVESPKWVGKCPSCGEWNTYVEEVIQKEVNQKGSWKSGTLAPKKVSHPKRLKEIDYEAQSRLITGDV
ELDRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALMLASTKILYVSGEESENQIKMRSERMDYRSDNCYVLSETNTQLIF
QQVDLLKPELLIIDSIQTLHSQYIESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKDGAIAGPKILEHMVDTVLQF
EGDRHLSYRILRTSKNRFGSTNELGIYEMHAAGLKAVTNPSEILMTQREEQLNGVAIGAMLEGNRPLLIEIQSLVSPATY
GTPQRSSTGHDAKRLNMLLAVLEKRGGMRLGQQDVFLNIAGGLRVDDPGLDLAVCASLISSYEDSPVDPRICFAGEIGLG
GEIRAVNRIESRIAEAAKMGFKKIMLSRYGLKSLNTEQFSLEIVPVTKLEEVYRHLFL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1013772 ABWH99_RS03965 WP_375585012.1 934333..935709(-) (radA) [Cyclobacterium xiamenense strain ac3]
ATGGCCAAAGTAAAAACTGCTTTTTTTTGTCAAAATTGTGGGGTAGAAAGCCCCAAATGGGTAGGAAAATGCCCCTCCTG
TGGAGAATGGAATACCTACGTGGAGGAAGTCATCCAAAAGGAGGTGAATCAGAAAGGCAGTTGGAAATCAGGAACACTCG
CCCCCAAGAAAGTCAGTCACCCCAAGCGACTCAAAGAAATCGACTACGAAGCACAAAGTCGCCTTATCACCGGAGATGTG
GAACTGGATCGGGTGCTGGGAGGTGGCATCGTTCCGGGTTCGTTGGTATTGATCGGCGGGGAACCGGGTATTGGCAAATC
TACCTTGATGCTGCAAATTGCACTCATGTTGGCTTCCACAAAAATCCTATATGTATCCGGGGAAGAAAGCGAAAACCAAA
TCAAGATGCGCAGCGAACGGATGGACTACCGATCCGATAATTGTTACGTACTCTCCGAAACCAACACACAACTAATTTTT
CAGCAGGTAGACCTGCTGAAACCCGAATTGCTGATCATCGACTCCATACAGACCTTGCATTCCCAATACATAGAATCGGC
CGCAGGATCGGTGAGTCAGGTGCGGGAATGTACGGCCGAACTGATGAAATTCGCCAAAGAAACCGGAACACCGGTTTTTC
TGATCGGTCATATAACCAAAGACGGAGCCATCGCAGGCCCAAAAATCCTCGAGCACATGGTGGATACGGTGTTGCAGTTT
GAGGGCGATCGCCACTTGAGCTACCGGATCCTGCGAACCTCCAAAAACCGTTTTGGCTCCACCAATGAATTGGGGATTTA
CGAAATGCATGCTGCCGGATTAAAAGCTGTTACCAATCCTTCCGAAATACTAATGACGCAACGGGAGGAACAGCTGAATG
GCGTGGCCATTGGTGCCATGCTGGAAGGAAACCGGCCGCTACTCATTGAGATACAGTCTCTGGTAAGTCCAGCTACCTAT
GGCACACCGCAGCGAAGCAGTACCGGACACGACGCAAAACGCCTCAACATGCTCTTGGCTGTATTGGAAAAAAGAGGTGG
TATGCGCCTGGGGCAGCAGGATGTATTTCTAAATATCGCCGGGGGATTACGGGTGGATGATCCAGGGCTGGACCTGGCGG
TATGCGCTTCCCTGATCTCTTCCTACGAAGATAGTCCCGTAGACCCACGCATCTGTTTTGCCGGAGAAATCGGCCTGGGC
GGGGAAATCCGCGCCGTCAACCGCATCGAAAGCCGCATTGCAGAGGCAGCAAAAATGGGATTTAAGAAAATCATGCTCTC
CCGATACGGGTTGAAATCCCTGAATACGGAGCAGTTTTCACTGGAAATTGTGCCCGTTACCAAATTGGAAGAAGTATACC
GACACCTCTTTTTGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.547

99.782

0.504
  radA Streptococcus mitis SK321

49.782

100

0.498
  radA Streptococcus mitis NCTC 12261

49.782

100

0.498
  radA Streptococcus pneumoniae Rx1

49.563

100

0.496
  radA Streptococcus pneumoniae D39

49.563

100

0.496
  radA Streptococcus pneumoniae R6

49.563

100

0.496
  radA Streptococcus pneumoniae TIGR4

49.563

100

0.496

Multiple sequence alignment