Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   JMW01_RS09235 Genome accession   NZ_LR890270
Coordinates   1957456..1958688 (+) Length   410 a.a.
NCBI ID   WP_001161834.1    Uniprot ID   -
Organism   Escherichia coli strain MINF_7C isolate MINF_7C     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1952456..1963688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW01_RS09220 - 1952971..1954647 (+) 1677 WP_001323195.1 polysaccharide biosynthesis/export family protein -
  JMW01_RS09225 kdsB 1954657..1955397 (+) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JMW01_RS09230 - 1955394..1957421 (+) 2028 WP_000579512.1 capsular polysaccharide biosynthesis protein -
  JMW01_RS09235 kpsS 1957456..1958688 (+) 1233 WP_001161834.1 capsular biosynthesis protein Regulator
  JMW01_RS09240 - 1958934..1960043 (+) 1110 Protein_1832 IS3 family transposase -
  JMW01_RS09245 - 1960261..1961838 (-) 1578 WP_000600936.1 hypothetical protein -
  JMW01_RS09250 - 1961835..1962206 (-) 372 WP_001309753.1 capsular polysaccharide biosynthesis protein -
  JMW01_RS09255 - 1962187..1962933 (-) 747 WP_000497656.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48905.37 Da        Isoelectric Point: 10.0344

>NTDB_id=1013689 JMW01_RS09235 WP_001161834.1 1957456..1958688(+) (kpsS) [Escherichia coli strain MINF_7C isolate MINF_7C]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWHEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDIKLFKKFRGYLLVKTQVNWVYYSNSNLCAYNSK
WAHVNLMDYN

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1013689 JMW01_RS09235 WP_001161834.1 1957456..1958688(+) (kpsS) [Escherichia coli strain MINF_7C isolate MINF_7C]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGATGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCCTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGCATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATAAAACTGTTTAAGAAGT
TTCGCGGGTATTTATTGGTTAAGACGCAGGTTAATTGGGTTTATTATTCCAATAGTAATCTATGTGCATATAATAGTAAG
TGGGCTCATGTTAATTTAATGGATTATAATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

95.366

0.38