Detailed information
Bioinformatically predicted
Overview
| Name | comC | Type | Machinery gene |
| Locus tag | ABVR75_RS09535 | Genome accession | NZ_CP159464 |
| Coordinates | 1840811..1841500 (+) | Length | 229 a.a. |
| NCBI ID | WP_076645336.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei subsp. sakei strain CBA3649 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1835811..1846500
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVR75_RS09515 (ABVR75_09515) | - | 1836253..1836804 (+) | 552 | WP_061827366.1 | isochorismatase family cysteine hydrolase | - |
| ABVR75_RS09520 (ABVR75_09520) | fusA | 1837374..1839461 (-) | 2088 | WP_016265721.1 | elongation factor G | - |
| ABVR75_RS09525 (ABVR75_09525) | rpsG | 1839557..1840027 (-) | 471 | WP_004270185.1 | 30S ribosomal protein S7 | - |
| ABVR75_RS09530 (ABVR75_09530) | rpsL | 1840117..1840530 (-) | 414 | WP_004270179.1 | 30S ribosomal protein S12 | - |
| ABVR75_RS09535 (ABVR75_09535) | comC | 1840811..1841500 (+) | 690 | WP_076645336.1 | A24 family peptidase | Machinery gene |
| ABVR75_RS09540 (ABVR75_09540) | - | 1841504..1842076 (-) | 573 | WP_061827365.1 | isochorismatase family protein | - |
| ABVR75_RS09545 (ABVR75_09545) | rpoC | 1842250..1845894 (-) | 3645 | WP_035147345.1 | DNA-directed RNA polymerase subunit beta' | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 26190.50 Da Isoelectric Point: 7.2085
>NTDB_id=1013618 ABVR75_RS09535 WP_076645336.1 1840811..1841500(+) (comC) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
Nucleotide
Download Length: 690 bp
>NTDB_id=1013618 ABVR75_RS09535 WP_076645336.1 1840811..1841500(+) (comC) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comC | Latilactobacillus sakei subsp. sakei 23K |
97.38 |
100 |
0.974 |