Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ABVR75_RS07075 | Genome accession | NZ_CP159464 |
| Coordinates | 1366294..1367301 (-) | Length | 335 a.a. |
| NCBI ID | WP_076648212.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei subsp. sakei strain CBA3649 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1361294..1372301
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVR75_RS07035 (ABVR75_07035) | - | 1361629..1362087 (-) | 459 | WP_025016390.1 | hypothetical protein | - |
| ABVR75_RS07040 (ABVR75_07040) | - | 1362142..1363338 (-) | 1197 | WP_025016389.1 | acetate kinase | - |
| ABVR75_RS07045 (ABVR75_07045) | - | 1363360..1364370 (-) | 1011 | WP_025016388.1 | class I SAM-dependent methyltransferase | - |
| ABVR75_RS07050 (ABVR75_07050) | - | 1364494..1364760 (-) | 267 | WP_143455065.1 | hypothetical protein | - |
| ABVR75_RS07055 (ABVR75_07055) | comGF | 1364795..1365307 (-) | 513 | WP_025016386.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ABVR75_RS07060 (ABVR75_07060) | comGE | 1365282..1365587 (-) | 306 | WP_025016385.1 | hypothetical protein | Machinery gene |
| ABVR75_RS07065 (ABVR75_07065) | comGD | 1365574..1366026 (-) | 453 | WP_076648209.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ABVR75_RS07070 (ABVR75_07070) | comGC | 1365998..1366297 (-) | 300 | WP_076645268.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ABVR75_RS07075 (ABVR75_07075) | comGB | 1366294..1367301 (-) | 1008 | WP_076648212.1 | type II secretion system F family protein | Machinery gene |
| ABVR75_RS07080 (ABVR75_07080) | comGA | 1367294..1368184 (-) | 891 | WP_076648214.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABVR75_RS07085 (ABVR75_07085) | - | 1368299..1369030 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| ABVR75_RS07090 (ABVR75_07090) | - | 1369121..1369621 (-) | 501 | WP_099960320.1 | VanZ family protein | - |
| ABVR75_RS07095 (ABVR75_07095) | - | 1369718..1370092 (+) | 375 | WP_213923249.1 | hypothetical protein | - |
| ABVR75_RS07105 (ABVR75_07105) | - | 1370279..1371679 (-) | 1401 | WP_353891335.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38444.37 Da Isoelectric Point: 9.2248
>NTDB_id=1013611 ABVR75_RS07075 WP_076648212.1 1366294..1367301(-) (comGB) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNHVILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNHVILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=1013611 ABVR75_RS07075 WP_076648212.1 1366294..1367301(-) (comGB) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATTCGGCAAAAGCGGCGCCGAGAAATTCG
GGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCACGTCATATTGTGGGGCTTTTTGTTAGTG
CTGGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATTCGGCAAAAGCGGCGCCGAGAAATTCG
GGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCACGTCATATTGTGGGGCTTTTTGTTAGTG
CTGGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
98.507 |
100 |
0.985 |