Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ABVR75_RS07055 Genome accession   NZ_CP159464
Coordinates   1364795..1365307 (-) Length   170 a.a.
NCBI ID   WP_025016386.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359795..1370307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS07025 (ABVR75_07025) - 1360721..1361086 (+) 366 WP_011374991.1 DUF805 domain-containing protein -
  ABVR75_RS07035 (ABVR75_07035) - 1361629..1362087 (-) 459 WP_025016390.1 hypothetical protein -
  ABVR75_RS07040 (ABVR75_07040) - 1362142..1363338 (-) 1197 WP_025016389.1 acetate kinase -
  ABVR75_RS07045 (ABVR75_07045) - 1363360..1364370 (-) 1011 WP_025016388.1 class I SAM-dependent methyltransferase -
  ABVR75_RS07050 (ABVR75_07050) - 1364494..1364760 (-) 267 WP_143455065.1 hypothetical protein -
  ABVR75_RS07055 (ABVR75_07055) comGF 1364795..1365307 (-) 513 WP_025016386.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABVR75_RS07060 (ABVR75_07060) comGE 1365282..1365587 (-) 306 WP_025016385.1 hypothetical protein Machinery gene
  ABVR75_RS07065 (ABVR75_07065) comGD 1365574..1366026 (-) 453 WP_076648209.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABVR75_RS07070 (ABVR75_07070) comGC 1365998..1366297 (-) 300 WP_076645268.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABVR75_RS07075 (ABVR75_07075) comGB 1366294..1367301 (-) 1008 WP_076648212.1 type II secretion system F family protein Machinery gene
  ABVR75_RS07080 (ABVR75_07080) comGA 1367294..1368184 (-) 891 WP_076648214.1 competence type IV pilus ATPase ComGA Machinery gene
  ABVR75_RS07085 (ABVR75_07085) - 1368299..1369030 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABVR75_RS07090 (ABVR75_07090) - 1369121..1369621 (-) 501 WP_099960320.1 VanZ family protein -
  ABVR75_RS07095 (ABVR75_07095) - 1369718..1370092 (+) 375 WP_213923249.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19690.57 Da        Isoelectric Point: 6.6472

>NTDB_id=1013607 ABVR75_RS07055 WP_025016386.1 1364795..1365307(-) (comGF) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MRLIGRPIKHSAFTLIEMVISMAILILTSQLLVATVGVLQKAIKVTQQQQNTINWHISTIQLDQFLADAYFTHHQDQDGS
KITFRKPDTNQSGEEAETVYYLKRMKNEMVVVSQLDGYMPLLGNLKQLQLDYQRPFVQIDATFTDQSRYQHEVFLEEQDE
QAKKKTIKTD

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1013607 ABVR75_RS07055 WP_025016386.1 1364795..1365307(-) (comGF) [Latilactobacillus sakei subsp. sakei strain CBA3649]
TTGCGATTAATTGGACGACCGATTAAGCATTCAGCGTTCACGCTAATTGAAATGGTGATTTCAATGGCGATTCTAATCCT
GACGAGTCAGTTACTGGTGGCAACGGTGGGTGTTTTACAAAAGGCAATTAAAGTGACACAACAACAGCAAAATACAATCA
ATTGGCATATCAGTACGATTCAGTTAGATCAGTTTTTAGCCGATGCGTATTTTACACATCATCAGGATCAAGATGGCTCC
AAAATCACTTTTCGAAAACCAGACACTAATCAGTCAGGGGAGGAAGCGGAGACTGTTTACTATTTAAAAAGGATGAAAAA
TGAAATGGTTGTTGTCAGCCAATTAGATGGGTATATGCCATTATTAGGCAACCTCAAGCAACTTCAACTTGACTATCAGC
GACCGTTTGTTCAAATCGATGCGACTTTTACGGATCAGAGTCGCTACCAACACGAAGTTTTCTTGGAGGAACAAGATGAA
CAGGCTAAAAAAAAGACGATTAAAACCGATTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(40-149)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Latilactobacillus sakei subsp. sakei 23K

98.824

100

0.988

Multiple sequence alignment