Detailed information NTG1013597

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMV89_RS05570
• Genome accession: NZ_LR890198
• Coordinates: 1188412..1189404 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MINF_1D isolate MINF_1D
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1183412..1194404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMV89_RS05540	ispD	1183473..1184183 (+)	711	WP_201520144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JMV89_RS05545	ispF	1184183..1184662 (+)	480	WP_201520145.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMV89_RS05550	truD	1184659..1185708 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
JMV89_RS05555	surE	1185689..1186450 (+)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
JMV89_RS05560	pcm	1186444..1187070 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMV89_RS05565	nlpD	1187255..1188349 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
JMV89_RS05570	rpoS	1188412..1189404 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMV89_RS05575	-	1189575..1190126 (-)	552	WP_001179443.1	flavodoxin family protein	-
JMV89_RS05580	-	1190351..1191394 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
JMV89_RS05585	ygbN	1191537..1192901 (-)	1365	WP_000104433.1	GntP family transporter	-
JMV89_RS05590	ygbM	1192990..1193766 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1013597 JMV89_RS05570 WP_000081550.1 1188412..1189404(+) (rpoS) [Escherichia coli strain MINF_1D isolate MINF_1D]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1013597 JMV89_RS05570 WP_000081550.1 1188412..1189404(+) (rpoS) [Escherichia coli strain MINF_1D isolate MINF_1D]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715