Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ABVJ71_RS11375 Genome accession   NZ_CP159358
Coordinates   2193568..2194680 (-) Length   370 a.a.
NCBI ID   WP_353854103.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2188568..2199680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS11360 gyrA 2188611..2191103 (-) 2493 WP_353854100.1 DNA gyrase subunit A -
  ABVJ71_RS11365 gyrB 2191333..2193249 (-) 1917 WP_353854101.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ABVJ71_RS11370 remB 2193305..2193550 (-) 246 WP_353854102.1 extracellular matrix regulator RemB -
  ABVJ71_RS11375 recF 2193568..2194680 (-) 1113 WP_353854103.1 DNA replication/repair protein RecF Machinery gene
  ABVJ71_RS11380 yaaA 2194697..2194912 (-) 216 WP_353854104.1 S4 domain-containing protein YaaA -
  ABVJ71_RS11385 dnaN 2195063..2196199 (-) 1137 WP_353854105.1 DNA polymerase III subunit beta -
  ABVJ71_RS11390 dnaA 2196396..2197736 (-) 1341 WP_353854106.1 chromosomal replication initiator protein DnaA -
  ABVJ71_RS11395 rpmH 2198357..2198491 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  ABVJ71_RS11400 rnpA 2198570..2198929 (+) 360 WP_353854107.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42506.49 Da        Isoelectric Point: 6.9867

>NTDB_id=1013389 ABVJ71_RS11375 WP_353854103.1 2193568..2194680(-) (recF) [Bacillus sp. Bos-x628]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKINHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHLGISRELETLTLQYHTAIEVSEASDLSNI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGNVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1013389 ABVJ71_RS11375 WP_353854103.1 2193568..2194680(-) (recF) [Bacillus sp. Bos-x628]
ATGTACATTCAAAGTCTGGCGTTAACTTCCTACCGAAACTATGAACACACCGAACTTCAATTCGACAATAAAGTCAATGT
CATGATCGGTGAGAACGCTCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAATCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAGAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCCAAAAAAGGGAAAAAGGGAAAGATCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGAGCATTAAACACCATCATGTTTGCACCGGAGGATTTGAGCCTTGTGAAGGGCAGTCCGCAGATCCGCAGGAGAT
TTCTCGACATGGAGATTGGACAAGTCTCTGCAGTCTACTTGCATGATTTATCGCTCTATCAGAAAATCCTTTCTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAGACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGCTGATAGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTTACCTTTACGAAACAGCTTGAAAAATGGGCGCAGCCATTGCATTTGGGGA
TTTCTAGAGAGTTAGAGACACTCACCCTCCAATACCACACGGCTATAGAGGTATCAGAAGCGTCAGACTTGTCGAACATA
AAGAATAGCTATGAAGAGTCGTTTCAGAAACTAAGAGACAGAGAAATAGACAGAGGAGTGACACTGTGGGGACCTCACAG
AGATGACCTTCTTTTTTTTGTGAATGGTCGAGATGTTCAGACATATGGATCTCAAGGGCAGCAAAGAACAACAGCCCTTT
CGCTAAAACTTGCAGAAATTGATCTGATTCATGAGGAAATTGGCGAATACCCGATTCTTCTTCTCGATGATGTACTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACGATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAGGGAATTGATCACGCCACACTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAATGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment