Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABVJ71_RS11140 Genome accession   NZ_CP159358
Coordinates   2150069..2150359 (+) Length   96 a.a.
NCBI ID   WP_353854070.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145069..2155359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS11125 - 2145254..2146537 (-) 1284 Protein_2158 ubiquitin-like domain-containing protein -
  ABVJ71_RS11130 - 2146701..2147468 (-) 768 WP_353854068.1 TatD family hydrolase -
  ABVJ71_RS11135 metG 2147549..2149549 (-) 2001 WP_353854069.1 methionine--tRNA ligase -
  ABVJ71_RS11140 abrB 2150069..2150359 (+) 291 WP_353854070.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ABVJ71_RS11145 rsmI 2150403..2151284 (-) 882 WP_353854071.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABVJ71_RS11150 - 2151259..2151558 (-) 300 WP_353854072.1 GIY-YIG nuclease family protein -
  ABVJ71_RS11155 - 2151545..2152288 (-) 744 WP_353854073.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ABVJ71_RS11160 yabA 2152344..2152700 (-) 357 WP_353854074.1 DNA replication initiation control protein YabA -
  ABVJ71_RS11165 - 2152715..2153542 (-) 828 WP_353854075.1 stage 0 sporulation family protein -
  ABVJ71_RS11170 holB 2153545..2154534 (-) 990 WP_353854076.1 DNA polymerase III subunit delta' -
  ABVJ71_RS11175 - 2154546..2154986 (-) 441 WP_353854077.1 YaaR family protein -
  ABVJ71_RS11180 - 2154999..2155328 (-) 330 WP_353854078.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10826.63 Da        Isoelectric Point: 7.9655

>NTDB_id=1013387 ABVJ71_RS11140 WP_353854070.1 2150069..2150359(+) (abrB) [Bacillus sp. Bos-x628]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQSQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1013387 ABVJ71_RS11140 WP_353854070.1 2150069..2150359(+) (abrB) [Bacillus sp. Bos-x628]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGCAC
GTTAGGAATTGCTGAAAAAGATGCTTTGGAAATTTATGTTGATGATGAAAAAATCATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCTGAACAAATCATTAACGAAATCCAAAGCCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

92.708

100

0.927

Multiple sequence alignment