Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABVJ71_RS09625 Genome accession   NZ_CP159358
Coordinates   1870930..1871355 (+) Length   141 a.a.
NCBI ID   WP_353853836.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1865930..1876355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS09615 - 1866518..1868509 (-) 1992 WP_353853834.1 hydantoinase B/oxoprolinase family protein -
  ABVJ71_RS09620 - 1868484..1870568 (-) 2085 WP_353853835.1 hydantoinase/oxoprolinase family protein -
  ABVJ71_RS09625 nucA/comI 1870930..1871355 (+) 426 WP_353853836.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABVJ71_RS09630 comJ 1871858..1872244 (+) 387 WP_353853837.1 competence protein ComJ -
  ABVJ71_RS09635 - 1872440..1872769 (-) 330 WP_353853838.1 YckD family protein -
  ABVJ71_RS09640 - 1872952..1873824 (+) 873 WP_353853839.1 transporter substrate-binding domain-containing protein -
  ABVJ71_RS09645 - 1873836..1874513 (+) 678 WP_353853840.1 amino acid ABC transporter permease -
  ABVJ71_RS09650 - 1874546..1875844 (-) 1299 WP_353853841.1 arsenic transporter -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15904.94 Da        Isoelectric Point: 5.9905

>NTDB_id=1013384 ABVJ71_RS09625 WP_353853836.1 1870930..1871355(+) (nucA/comI) [Bacillus sp. Bos-x628]
MKLLKIILLLLLIIIGLATGYIQLDQGKQETQSSYDKIIHFPSDRYPETAKHIEEAIDEGHSSICTIDRANSDEQRDRSL
HSIPTKRGYDRDEWPMAMCKEGGTGASVKYVSPSDNRGAGSWISHQLTDDRDGTRIKFIID

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1013384 ABVJ71_RS09625 WP_353853836.1 1870930..1871355(+) (nucA/comI) [Bacillus sp. Bos-x628]
ATGAAACTTCTCAAAATCATTCTCTTGCTTTTATTAATTATCATTGGCTTAGCTACAGGCTATATCCAGCTAGATCAAGG
TAAACAGGAGACTCAATCATCTTATGACAAAATCATTCACTTTCCATCAGATCGATATCCAGAAACAGCTAAGCATATAG
AAGAAGCAATTGATGAAGGTCATTCATCCATTTGTACAATTGATCGTGCAAATAGCGATGAACAGAGGGATCGTTCACTT
CATAGTATCCCAACAAAACGAGGATATGACCGAGACGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAACAGGTGCCTC
TGTGAAATATGTGAGTCCCTCAGATAACAGAGGAGCAGGTTCTTGGATTAGCCATCAATTGACAGATGATCGTGACGGCA
CAAGAATTAAATTTATCATTGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.905

89.362

0.553

Multiple sequence alignment