Detailed information NTG0101338

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HPOKI673_RS01355
• Genome accession: NZ_CP006825
• Coordinates: 265441..268011 (+)
• Length: 856 a.a.
• NCBI ID: WP_025313653.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki673
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 260441..273011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI673_RS01330 (HPOKI673_01410)	xseA	260686..261948 (+)	1263	WP_025313650.1	exodeoxyribonuclease VII large subunit	-
HPOKI673_RS01335 (HPOKI673_01415)	-	261966..263120 (-)	1155	WP_025222504.1	DNA methyltransferase	-
HPOKI673_RS01340 (HPOKI673_01420)	-	263135..263746 (-)	612	WP_025313651.1	hypothetical protein	-
HPOKI673_RS01345 (HPOKI673_01425)	-	263927..264615 (+)	689	Protein_263	BsaWI family type II restriction enzyme	-
HPOKI673_RS01350 (HPOKI673_01430)	-	264612..265370 (+)	759	WP_025313652.1	DNA-methyltransferase	-
HPOKI673_RS01355 (HPOKI673_01435)	clpC	265441..268011 (+)	2571	WP_025313653.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
HPOKI673_RS01360 (HPOKI673_01440)	-	268067..268786 (+)	720	WP_025222509.1	cytochrome c biogenesis protein CcdA	-
HPOKI673_RS01365 (HPOKI673_01445)	-	268796..269932 (+)	1137	WP_025313654.1	amidohydrolase family protein	-
HPOKI673_RS01370 (HPOKI673_01450)	mqnF	269917..271146 (+)	1230	WP_025313655.1	aminofutalosine deaminase	-
HPOKI673_RS01375 (HPOKI673_01455)	-	271207..271449 (+)	243	WP_000780041.1	nuclease	-
HPOKI673_RS01380 (HPOKI673_01460)	miaB	271459..272772 (+)	1314	WP_025222512.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96582.48 Da
• Isoelectric Point: 6.4315

>NTDB_id=101338 HPOKI673_RS01355 WP_025313653.1 265441..268011(+) (clpC) [Helicobacter pylori oki673]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKLAKVSQINK
QNIQLNQALIQSLENAQGLMAKIGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGTTIQGKNDDSNWESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFREISRLKMETEILK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGALLEENLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAIANIVGILFENIQKKALERGINITLNEEAKEL
IAKAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK

Nucleotide

• Length: 2571 bp

>NTDB_id=101338 HPOKI673_RS01355 WP_025313653.1 265441..268011(+) (clpC) [Helicobacter pylori oki673]
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTCTAGCTTTACACCATAAAAA
CGCTGAAGTAACGCCTTTGCACATGCTTTTTGTCATGCTCAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA
TGTCTGTGGATATTCAAGCCTTAAGGCTTAGCGTTCAAAGCGAATTGAATAAGTTGGCTAAAGTTTCACAAATCAACAAG
CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAATTGGCGATTCTTT
CATCGCTACAGATGTGTATCTTTTGGCGAACATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCACGACTATCCAAGGTAAAAACGATGATTCTAATTGGGAAAGTTTGGAG
AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTCGATCCGGTGATTGGGAGGGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG
TGGAGGGTTTGGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATTTA
AGCTTATTGGTGGCTGGAGCGAAATACAGAGGCGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG
CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTGAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCGTTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGTATCAATGAAGCTTTACAGATTTT
AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTTATAGCGAGCGCTAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCCCAATTAAAAATG
CAAATGGAATCAGAGCCGGCAAAACTCTCTAGCGTTAAGCGCTCCATTCAAAGATTAGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC
AATTAGAAGCGCAATTTGAAAACGAAAAAGAAGTGTTTAGAGAAATTTCACGCTTGAAAATGGAAACGGAAATCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAAGAATTGCAGCACAAATGGGAAGCGATGCAACAAAACGGGGCGTTGTTGCAAAACGCTTTAACCGAAA
ACAATATCGCTGAGATCGTGAGCCAATGGACGCATATCCCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGCTTTCTCTTTTTAGGGCCAACGGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGACATGAGCGAATACATGGAAAAA
CATGCAATAAGCCGTCTTATTGGAGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG
CAGAAAACCCTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTTTTGTTGCAGGTTT
TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGGCGCGCTTTTGGAAGAAAATTTGAGTGAAGCCGATAAACAAAAAGCGATTAAAGAGAGTTTGAGGCAATTCTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGCCATGCTATCGCTAATATCGTGG
GGATTCTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGAGGCATTAATATAACCCTAAACGAAGAGGCAAAAGAATTG
ATCGCTAAAGCGGGATTTGACAGATTTTATGGCGCTAGACCCCTAAAGCGCGCGCTCTATGAAATGGTAGAAGATAAGCT
CGCTGAACTCATTTTAGAGGATAAAATTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAAATTGTGCCTA
AGATTAAGTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-142)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• AAA lid domain (AAA_lid_9) (339-440)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	42.841	100	0.437
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.09	100	0.423