Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABVJ71_RS06250 Genome accession   NZ_CP159358
Coordinates   1185024..1186850 (-) Length   608 a.a.
NCBI ID   WP_353856586.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180024..1191850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS06215 - 1180228..1180857 (-) 630 WP_353856107.1 GTP pyrophosphokinase family protein -
  ABVJ71_RS06220 - 1180891..1181256 (-) 366 WP_353856584.1 hypothetical protein -
  ABVJ71_RS06225 - 1181493..1182068 (+) 576 WP_353856108.1 CYTH domain-containing protein -
  ABVJ71_RS06230 - 1182094..1182858 (+) 765 WP_353856585.1 lytic transglycosylase domain-containing protein -
  ABVJ71_RS06235 - 1183136..1183534 (+) 399 WP_353856109.1 thiol management oxidoreductase -
  ABVJ71_RS06240 - 1183531..1184442 (+) 912 WP_353856110.1 ClpXP adapter SpxH family protein -
  ABVJ71_RS06245 - 1184740..1184913 (+) 174 WP_353856111.1 hypothetical protein -
  ABVJ71_RS06250 pepF 1185024..1186850 (-) 1827 WP_353856586.1 oligoendopeptidase F Regulator
  ABVJ71_RS06255 - 1187065..1188228 (-) 1164 WP_353856112.1 competence protein CoiA family protein -
  ABVJ71_RS06260 cls 1188391..1189911 (-) 1521 WP_353856113.1 cardiolipin synthase -
  ABVJ71_RS06265 mecA 1189995..1190660 (-) 666 WP_353856114.1 adaptor protein MecA Regulator
  ABVJ71_RS06270 - 1190925..1191587 (+) 663 WP_353856115.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70302.92 Da        Isoelectric Point: 5.2085

>NTDB_id=1013370 ABVJ71_RS06250 WP_353856586.1 1185024..1186850(-) (pepF) [Bacillus sp. Bos-x628]
MTSQSKSNHLPDRSEVQEENKWRLEDIFESVDTWNKEYENVKKDIPKLAQFKGKLAHSADVLYEALTFQDQLSEKLGKLY
TYAHMKYDEDTTNSSFQALNDKASNLYTQLSSASAYIVPEILSIQEDKLQQFIMEKEELKLYSHALEEINKERPHILSEE
QEALLAEASEPLSSSSTTFSMFNNADISFPTVKDEKGEEKQITHGNFITFLNSDDREVRKNAFKAVYKTYDQYKNTLAST
LSGSIKKDNFYAKVRNYQSAREAALSRNSIPEEVYDNLIDTIHQYLPLLHRYIELRKKVLKLDEVHNYDLYTPLVKDAGM
KLTYDEAKEYMLKGLAPLGEEYVSIVKEGLDNRWVDVYENKGKRSGAYSSGSYGTNPYILMNWQNNIDNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLQDKKQRLYVLNHLLEGFRGTVFRQTMFAEFEHLIHVKAQ
EGEALTPEFMTNLYYDLNKKYFGDGMVVDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSKQILEEGKPAVDRYTDFL
KAGSSDYPINVLKKAGVDMASKKPIEAACQLFEEKLNEMEELISKTSE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=1013370 ABVJ71_RS06250 WP_353856586.1 1185024..1186850(-) (pepF) [Bacillus sp. Bos-x628]
ATGACTTCACAAAGTAAAAGCAACCATTTACCAGACAGAAGCGAAGTACAAGAAGAAAACAAATGGCGTCTTGAAGATAT
TTTTGAAAGCGTCGATACATGGAACAAGGAATACGAAAATGTAAAAAAAGACATCCCTAAGCTTGCACAATTTAAAGGCA
AGCTGGCACACTCTGCTGATGTTTTGTATGAAGCCCTAACATTTCAGGATCAACTTTCTGAAAAGCTTGGCAAGCTTTAT
ACATATGCGCACATGAAATACGATGAAGACACCACAAATTCATCATTCCAGGCATTAAATGATAAAGCGTCCAATCTATA
TACACAGTTGTCTAGTGCATCTGCTTATATTGTTCCAGAAATTTTATCGATACAAGAAGATAAACTGCAGCAATTTATTA
TGGAGAAAGAAGAATTAAAACTTTATTCTCACGCTCTCGAAGAAATTAACAAAGAGCGCCCGCACATTTTAAGTGAGGAG
CAGGAAGCTTTATTAGCTGAAGCCTCTGAACCACTCTCATCTTCATCCACTACATTTAGTATGTTTAATAATGCTGATAT
ATCTTTCCCTACTGTAAAGGATGAAAAAGGGGAAGAAAAGCAGATTACACATGGTAACTTTATCACATTTTTAAATAGTG
ATGACCGTGAAGTGAGAAAGAATGCCTTCAAGGCCGTTTACAAAACGTATGATCAATATAAGAATACACTGGCCTCCACA
CTTAGCGGTTCTATTAAAAAGGATAATTTTTATGCGAAAGTACGTAATTATCAATCGGCAAGGGAAGCTGCTTTATCTCG
CAATAGCATTCCAGAAGAAGTGTATGACAATCTGATTGATACGATTCATCAATATTTACCGTTATTACACCGCTATATAG
AATTGCGCAAAAAGGTATTAAAGCTTGATGAAGTGCACAATTATGATTTGTATACACCGCTTGTGAAAGATGCGGGCATG
AAGTTAACATACGATGAAGCTAAGGAGTACATGCTTAAAGGTCTCGCGCCATTAGGGGAAGAGTATGTGTCCATTGTAAA
AGAAGGACTCGATAACCGCTGGGTTGACGTTTATGAAAATAAAGGAAAACGAAGCGGAGCCTATTCATCTGGAAGTTATG
GAACAAACCCTTATATTTTAATGAACTGGCAAAATAATATCGATAATTTATTTACCTTGGTGCATGAATTTGGTCACTCA
GTCCACAGCTATTATACAAGAAAGCACCAGCCATATCCGTATGGAAACTATAGTATCTTTGTTGCTGAAGTTGCTTCCAC
AACAAATGAGGCGTTATTAGGAGAATATTTGCTAAACAACTTACAGGATAAAAAGCAGCGTTTGTATGTTCTGAATCATC
TATTAGAAGGATTTAGAGGGACTGTATTTAGACAAACCATGTTTGCTGAATTTGAACATCTTATTCACGTGAAAGCACAA
GAAGGGGAGGCATTAACTCCAGAGTTTATGACGAATCTTTATTACGATCTGAATAAGAAGTATTTTGGTGACGGCATGGT
TGTTGATAAGGAAATCGGATTAGAGTGGTCTAGAATTCCGCATTTCTATTACAACTATTATGTGTATCAATATGCGACAG
GTTATAGTGCAGCTCAAGCGTTAAGTAAGCAAATATTGGAGGAAGGAAAACCTGCGGTGGACCGTTATACAGATTTCCTA
AAAGCAGGAAGCTCCGACTACCCTATCAATGTGCTGAAAAAAGCAGGCGTCGATATGGCATCCAAAAAGCCGATTGAAGC
TGCTTGTCAATTGTTTGAGGAAAAACTAAATGAAATGGAAGAGCTCATTTCAAAAACAAGTGAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.663

97.697

0.485

Multiple sequence alignment