Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABVJ71_RS05370 Genome accession   NZ_CP159358
Coordinates   1025137..1025598 (+) Length   153 a.a.
NCBI ID   WP_353855958.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1020137..1030598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS05350 fadH 1020253..1021017 (-) 765 WP_353855954.1 2,4-dienoyl-CoA reductase -
  ABVJ71_RS05355 - 1021282..1021497 (+) 216 WP_353855955.1 metallophosphoesterase -
  ABVJ71_RS05360 - 1021699..1022196 (+) 498 WP_353855956.1 L,D-transpeptidase family protein -
  ABVJ71_RS05365 - 1022271..1023548 (+) 1278 WP_353855957.1 MFS transporter -
  ABVJ71_RS05370 kre 1025137..1025598 (+) 462 WP_353855958.1 YkyB family protein Regulator
  ABVJ71_RS05375 - 1025632..1026543 (-) 912 WP_353855959.1 chemotaxis protein -
  ABVJ71_RS05380 - 1026617..1027930 (-) 1314 WP_353855960.1 MFS transporter -
  ABVJ71_RS05385 - 1028361..1028516 (+) 156 WP_353855961.1 hypothetical protein -
  ABVJ71_RS05390 - 1028579..1029463 (-) 885 WP_353855962.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17798.42 Da        Isoelectric Point: 10.1672

>NTDB_id=1013366 ABVJ71_RS05370 WP_353855958.1 1025137..1025598(+) (kre) [Bacillus sp. Bos-x628]
MDDYAHTKDIEPTAENISKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGDLNQSYRNPKANMSLNRAKQILQTYVGLKEKPIVTKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1013366 ABVJ71_RS05370 WP_353855958.1 1025137..1025598(+) (kre) [Bacillus sp. Bos-x628]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAATATCTCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGGAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTAATTGAAATTGGAGAT
TATTATTTTCACCTGCCTCCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAGATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCGAAACAAATTCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTATCGTTA
CAAAACAAAAATCACATTATACAAAGCCTGTCTTTAAAAGACTTGGAGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.778

Multiple sequence alignment