Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABVJ71_RS05155 Genome accession   NZ_CP159358
Coordinates   987662..987940 (-) Length   92 a.a.
NCBI ID   WP_353855921.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 982662..992940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS05140 - 984620..985288 (-) 669 WP_353855918.1 TrkA family potassium uptake protein -
  ABVJ71_RS05145 - 985326..986162 (-) 837 WP_353855919.1 gamma-glutamylcyclotransferase -
  ABVJ71_RS05150 - 986187..987476 (-) 1290 WP_353855920.1 ATP-binding protein -
  ABVJ71_RS05155 abrB 987662..987940 (-) 279 WP_353855921.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ABVJ71_RS05160 mreBH 988217..989224 (+) 1008 WP_353855922.1 rod-share determining protein MreBH -
  ABVJ71_RS05165 - 989297..989428 (+) 132 WP_003210922.1 protein YkpC -
  ABVJ71_RS05170 - 989534..990766 (+) 1233 WP_353855923.1 aminopeptidase -
  ABVJ71_RS05175 - 990812..992431 (-) 1620 WP_353855924.1 ATP-binding cassette domain-containing protein -
  ABVJ71_RS05180 - 992574..992840 (+) 267 WP_353855925.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10406.18 Da        Isoelectric Point: 5.1765

>NTDB_id=1013364 ABVJ71_RS05155 WP_353855921.1 987662..987940(-) (abrB) [Bacillus sp. Bos-x628]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDEDKIVLKKYQPQGVCLMTGEITSENHEYGNGQITLSTEGAK
LLLKELQEALKQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1013364 ABVJ71_RS05155 WP_353855921.1 987662..987940(-) (abrB) [Bacillus sp. Bos-x628]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGATGAACTAGGACGTATTGTGATGCCAATCGAGTTGAGAAGAGCACTAGA
TATTGCGATTAAAGACAGTATGGAATTTTTTATAGATGAAGATAAAATCGTCTTGAAAAAATATCAGCCACAAGGCGTTT
GTCTTATGACTGGTGAGATTACTTCTGAGAATCATGAGTATGGAAATGGTCAAATTACATTGAGCACTGAAGGCGCAAAA
CTACTGCTGAAAGAGCTGCAGGAAGCACTTAAACAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

52.174

100

0.522

Multiple sequence alignment