Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABVJ71_RS02490 Genome accession   NZ_CP159358
Coordinates   460381..461016 (-) Length   211 a.a.
NCBI ID   WP_353856528.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 455381..466016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS02470 - 455725..456429 (+) 705 WP_353855449.1 DnaD domain-containing protein -
  ABVJ71_RS02475 nth 456447..457109 (+) 663 WP_353856527.1 endonuclease III -
  ABVJ71_RS02480 - 457106..457615 (+) 510 WP_353855450.1 YpoC family protein -
  ABVJ71_RS02485 - 457653..460361 (-) 2709 WP_353855451.1 PBP1A family penicillin-binding protein -
  ABVJ71_RS02490 recU 460381..461016 (-) 636 WP_353856528.1 Holliday junction resolvase RecU Machinery gene
  ABVJ71_RS02495 - 461067..462023 (+) 957 WP_353856529.1 DUF2515 domain-containing protein -
  ABVJ71_RS02500 sspM 462048..462152 (-) 105 WP_353855452.1 acid-soluble spore protein SspM -
  ABVJ71_RS02505 - 462220..462345 (+) 126 WP_353855453.1 hypothetical protein -
  ABVJ71_RS02510 - 462345..462581 (+) 237 WP_353855454.1 DUF5446 family protein -
  ABVJ71_RS02515 - 462630..463013 (+) 384 WP_353855455.1 YppE family protein -
  ABVJ71_RS02520 - 463120..463569 (+) 450 WP_353856530.1 YppG family protein -
  ABVJ71_RS02525 - 463589..464008 (-) 420 WP_353855456.1 Hsp20/alpha crystallin family protein -
  ABVJ71_RS02530 - 464176..464682 (+) 507 WP_353855457.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24288.61 Da        Isoelectric Point: 9.5564

>NTDB_id=1013359 ABVJ71_RS02490 WP_353856528.1 460381..461016(-) (recU) [Bacillus sp. Bos-x628]
MIRYPNGKSYQPVQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETTSTTSFPLKNFHDHQIEHMKQVVKQGGICFVIISAFGSVYYLPASELFFFWERQI
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDENHHQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1013359 ABVJ71_RS02490 WP_353856528.1 460381..461016(-) (recU) [Bacillus sp. Bos-x628]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCAGTACAACAAATCGGAACAAAAAAAAGAATAAGCGGCGAATCCTC
TTATAGTAATCGAGGAATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTATTATTTGGTAAACGGGATTGCAGTCA
TTCATAAGAAGCCTACCCCAGTTCAAATTGTCAATGTTGATTATCCAAAAAGGAGCGCCGCTGTCATTAAAGAAGCCTAT
TTTAAACAGTCATCGACAACGGACTATAATGGGGTTTATAAAGGGCGCTATATTGACTTCGAAGCAAAGGAAACCACAAG
TACAACCTCGTTTCCGCTCAAAAATTTTCATGATCATCAAATTGAGCATATGAAGCAGGTTGTCAAGCAAGGAGGTATTT
GTTTTGTTATTATATCCGCGTTTGGCTCCGTTTATTATTTACCTGCTTCTGAGCTCTTTTTCTTTTGGGAGCGGCAAATT
CAAAATGGGCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCTGGTCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAAACACTTCATTTTTCGGATGAAAATCACCATCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.864

94.313

0.687

Multiple sequence alignment