Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABVJ71_RS01045 Genome accession   NZ_CP159358
Coordinates   205964..206734 (+) Length   256 a.a.
NCBI ID   WP_353855202.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 200964..211734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS01015 - 201284..203371 (+) 2088 WP_353856502.1 HD family phosphohydrolase -
  ABVJ71_RS01020 ybeY 203372..203851 (+) 480 WP_353855197.1 rRNA maturation RNase YbeY -
  ABVJ71_RS01025 - 203829..204215 (+) 387 WP_353855198.1 diacylglycerol kinase family protein -
  ABVJ71_RS01030 - 204329..204727 (+) 399 WP_353855199.1 cytidine deaminase -
  ABVJ71_RS01035 era 204720..205625 (+) 906 WP_353855200.1 GTPase Era -
  ABVJ71_RS01040 - 205785..205928 (+) 144 WP_353855201.1 YqzL family protein -
  ABVJ71_RS01045 recO 205964..206734 (+) 771 WP_353855202.1 DNA repair protein RecO Machinery gene
  ABVJ71_RS01050 glyQ 207065..207952 (+) 888 WP_353855203.1 glycine--tRNA ligase subunit alpha -
  ABVJ71_RS01055 glyS 207945..209990 (+) 2046 WP_353855204.1 glycine--tRNA ligase subunit beta -
  ABVJ71_RS01060 - 210159..210797 (+) 639 WP_353855205.1 helix-turn-helix transcriptional regulator -
  ABVJ71_RS01065 - 210823..211644 (+) 822 WP_353855206.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29260.87 Da        Isoelectric Point: 7.7751

>NTDB_id=1013353 ABVJ71_RS01045 WP_353855202.1 205964..206734(+) (recO) [Bacillus sp. Bos-x628]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMAELLDKGTEEKQPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGNKEG
QFHFSIRENGFICQNCFGKDPYKLPLSPATARLLRLFHYFDLSRLGHVDVKPQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQIENMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1013353 ABVJ71_RS01045 WP_353855202.1 205964..206734(+) (recO) [Bacillus sp. Bos-x628]
ATGCTCATTAAAAGTGAAGGAATTGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTTACAAG
AGAACATGGGAAAATTGGCGTAATGGCAAGAGGCGCTAAAAAAACAAACAGCCGGCTGTCCGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTTATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATTGAAAGCATGCGAGCC
ATTCGGGAAGATTTATTTCTAACCGCTTATGCCGCATATATGGCGGAGTTACTTGATAAAGGAACAGAAGAAAAACAGCC
GAACCCTTATTTGTTTGAGCTACTTCTCCAATCTTTGCGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TAGTAGAAGTCAAAATGTTGTCAGTGATGGGGATGAAACCTGAACTGGATCAGTGCGTGCACTGCGGTAATAAAGAAGGG
CAGTTCCATTTTTCGATTAGAGAAAACGGATTTATTTGTCAAAACTGCTTTGGCAAAGATCCTTACAAACTGCCCCTGTC
CCCAGCAACTGCAAGACTTCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTTGGTCATGTTGATGTCAAACCACAAA
CAAAGCAGGAAATTCGTCAAGTTCTTGACCATTATTATGATGAGTATTCCGGCCTTTATTTAAAATCGAAAAAGTTCATG
AACCAGATTGAAAATATGAAAAAACTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

74.609

100

0.746

Multiple sequence alignment