Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABJ59_RS14365 Genome accession   NZ_AP027512
Coordinates   2925279..2925908 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LR-28     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2920279..2930908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ59_RS14350 (VEE31_27370) helD 2920521..2922575 (-) 2055 WP_115439229.1 DNA helicase IV -
  AABJ59_RS14355 (VEE31_27380) yccF 2922698..2923144 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABJ59_RS14360 (VEE31_27390) yccS 2923154..2925316 (+) 2163 WP_143365892.1 YccS family putative transporter -
  AABJ59_RS14365 (VEE31_27400) sxy/tfoX 2925279..2925908 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABJ59_RS14370 (VEE31_27410) sulA 2926127..2926636 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  AABJ59_RS14375 (VEE31_27430) ompA 2926993..2928033 (+) 1041 WP_022645481.1 porin OmpA -
  AABJ59_RS14380 (VEE31_27440) matP 2928109..2928561 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABJ59_RS14385 (VEE31_27450) ycbZ 2928747..2930507 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=101334 AABJ59_RS14365 WP_000839153.1 2925279..2925908(-) (sxy/tfoX) [Escherichia coli strain LR-28]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101334 AABJ59_RS14365 WP_000839153.1 2925279..2925908(-) (sxy/tfoX) [Escherichia coli strain LR-28]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCTGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment