Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPOKI422_RS06055 Genome accession   NZ_CP006824
Coordinates   1279224..1280273 (+) Length   349 a.a.
NCBI ID   WP_025366561.1    Uniprot ID   -
Organism   Helicobacter pylori oki422     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274224..1285273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI422_RS06040 (HPOKI422_06295) - 1274799..1276619 (+) 1821 WP_025277091.1 hypothetical protein -
  HPOKI422_RS06045 (HPOKI422_06300) asd 1276807..1277847 (-) 1041 WP_025277092.1 aspartate-semialdehyde dehydrogenase -
  HPOKI422_RS06050 (HPOKI422_06305) hisS 1277834..1279162 (-) 1329 WP_015428190.1 histidine--tRNA ligase -
  HPOKI422_RS06055 (HPOKI422_06310) waaF 1279224..1280273 (+) 1050 WP_025366561.1 lipopolysaccharide heptosyltransferase II Regulator
  HPOKI422_RS06065 (HPOKI422_06325) fusA 1281152..1283230 (-) 2079 WP_025366563.1 elongation factor G -
  HPOKI422_RS06070 (HPOKI422_06330) rpsG 1283242..1283709 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  HPOKI422_RS06075 (HPOKI422_06335) rpsL 1283725..1284132 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39501.17 Da        Isoelectric Point: 9.3633

>NTDB_id=101329 HPOKI422_RS06055 WP_025366561.1 1279224..1280273(+) (waaF) [Helicobacter pylori oki422]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRISFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSIAPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=101329 HPOKI422_RS06055 WP_025366561.1 1279224..1280273(+) (waaF) [Helicobacter pylori oki422]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAGGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCAGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTATTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCCAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCGCGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.861

99.14

0.375

Multiple sequence alignment