Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABU610_RS04125 Genome accession   NZ_CP159333
Coordinates   889001..889654 (-) Length   217 a.a.
NCBI ID   WP_004918078.1    Uniprot ID   A0AAP6LJM8
Organism   Riemerella anatipestifer strain TLb2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 884001..894654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU610_RS04110 (ABU610_04110) - 884821..885903 (-) 1083 WP_004918073.1 serine hydrolase -
  ABU610_RS04115 (ABU610_04115) - 886014..887669 (-) 1656 WP_004918074.1 ribonucleoside-diphosphate reductase subunit alpha -
  ABU610_RS04120 (ABU610_04120) - 887717..888691 (-) 975 WP_004918076.1 ribonucleotide-diphosphate reductase subunit beta -
  ABU610_RS04125 (ABU610_04125) comF 889001..889654 (-) 654 WP_004918078.1 ComF family protein Machinery gene
  ABU610_RS04135 (ABU610_04135) - 889876..890427 (-) 552 WP_004918080.1 hypothetical protein -
  ABU610_RS04140 (ABU610_04140) - 890482..891132 (-) 651 WP_004918082.1 HD domain-containing protein -
  ABU610_RS04145 (ABU610_04145) gdhA 891264..892622 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  ABU610_RS04150 (ABU610_04150) dprA 892806..893909 (-) 1104 WP_004918085.1 DNA-processing protein DprA Machinery gene
  ABU610_RS04155 (ABU610_04155) - 893912..894289 (-) 378 WP_004918086.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25339.46 Da        Isoelectric Point: 9.4150

>NTDB_id=1013260 ABU610_RS04125 WP_004918078.1 889001..889654(-) (comF) [Riemerella anatipestifer strain TLb2]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1013260 ABU610_RS04125 WP_004918078.1 889001..889654(-) (comF) [Riemerella anatipestifer strain TLb2]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1

Multiple sequence alignment