Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPOKI422_RS02960 Genome accession   NZ_CP006824
Coordinates   600534..602054 (+) Length   506 a.a.
NCBI ID   WP_025366407.1    Uniprot ID   -
Organism   Helicobacter pylori oki422     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 595534..607054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI422_RS02930 (HPOKI422_03030) moaC 595682..596158 (+) 477 WP_025275843.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPOKI422_RS02935 (HPOKI422_03035) hpaA 596277..597059 (+) 783 WP_025366406.1 flagellar sheath lipoprotein HpaA -
  HPOKI422_RS02940 (HPOKI422_03040) - 597088..597924 (+) 837 WP_025275845.1 outer membrane protein -
  HPOKI422_RS02945 (HPOKI422_03045) tig 598036..599391 (+) 1356 WP_025275846.1 trigger factor -
  HPOKI422_RS02950 (HPOKI422_03050) clpP 599412..599999 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPOKI422_RS02955 (HPOKI422_03055) def 600004..600528 (+) 525 WP_015427911.1 peptide deformylase -
  HPOKI422_RS02960 (HPOKI422_03060) comM 600534..602054 (+) 1521 WP_025366407.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPOKI422_RS02965 (HPOKI422_03065) - 602079..604139 (+) 2061 WP_025275848.1 heavy metal translocating P-type ATPase -
  HPOKI422_RS02970 (HPOKI422_03070) - 604180..605388 (+) 1209 WP_025366408.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57210.22 Da        Isoelectric Point: 8.6896

>NTDB_id=101319 HPOKI422_RS02960 WP_025366407.1 600534..602054(+) (comM) [Helicobacter pylori oki422]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSSTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
RNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSINKVKKVAR
TIADLNACEDIEKTHVFKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=101319 HPOKI422_RS02960 WP_025366407.1 600534..602054(+) (comM) [Helicobacter pylori oki422]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCCGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAGTCAGCCTTACAGA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCCAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCGAATGAGGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGGGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAACCAAAGCAGACACCCATACGAAAAAACTACCCTTTAAAACGATAGAATTAAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAGGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAACCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
AAGAGCCAAAACCTGGCGAAATCGCGTTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCCTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
AGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAACAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTATTAATAAGGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAAACTCATGTGTTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.628

100

0.976
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment