Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ETECE925_RS06030 Genome accession   NZ_LR883000
Coordinates   1220738..1221730 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli isolate L6_E562_ETEC     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215738..1226730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETECE925_RS06005 (ETECE562_01322) ygbN 1216392..1217756 (+) 1365 WP_000104429.1 GntP family transporter -
  ETECE925_RS06010 (ETECE562_01323) - 1217796..1218032 (-) 237 WP_000562991.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ETECE925_RS06015 (ETECE562_01324) - 1218043..1219470 (-) 1428 WP_000863215.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ETECE925_RS06020 (ETECE562_01325) - 1219470..1220063 (-) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ETECE925_RS06025 (ETECE562_01326) - 1220210..1220617 (+) 408 WP_001208070.1 MarR family winged helix-turn-helix transcriptional regulator -
  ETECE925_RS06030 (ETECE562_01327) rpoS 1220738..1221730 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ETECE925_RS06035 (ETECE562_01328) nlpD 1221793..1222887 (-) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  ETECE925_RS06040 (ETECE562_01329) pcm 1223072..1223698 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ETECE925_RS06045 (ETECE562_01330) surE 1223692..1224453 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ETECE925_RS06050 (ETECE562_01331) truD 1224434..1225483 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  ETECE925_RS06055 (ETECE562_01332) ispF 1225480..1225959 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ETECE925_RS06060 (ETECE562_01333) ispD 1225959..1226669 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=1013186 ETECE925_RS06030 WP_000081550.1 1220738..1221730(-) (rpoS) [Escherichia coli isolate L6_E562_ETEC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1013186 ETECE925_RS06030 WP_000081550.1 1220738..1221730(-) (rpoS) [Escherichia coli isolate L6_E562_ETEC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715