Detailed information NTG1013148

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: JL022_RS23840
• Genome accession: NZ_LR882997
• Coordinates: 4903540..4904565 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli isolate L3_E36_ETEC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4898540..4909565

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JL022_RS23830 (ETECE36_05467)	rpmE	4900771..4900983 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
JL022_RS23835 (ETECE36_05468)	priA	4901186..4903384 (+)	2199	WP_001356138.1	primosomal protein N'	Machinery gene
JL022_RS23840 (ETECE36_05469)	cytR	4903540..4904565 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
JL022_RS23845 (ETECE36_05470)	ftsN	4904657..4905616 (+)	960	WP_000068830.1	cell division protein FtsN	-
JL022_RS23850 (ETECE36_05471)	hslV	4905709..4906239 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
JL022_RS23855 (ETECE36_05472)	hslU	4906249..4907580 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
JL022_RS23860 (ETECE36_05473)	menA	4907647..4908573 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
JL022_RS23865 (ETECE36_05474)	rraA	4908666..4909151 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
JL022_RS23870 (ETECE36_05475)	zapB	4909236..4909481 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1013148 JL022_RS23840 WP_000644904.1 4903540..4904565(+) (cytR) [Escherichia coli isolate L3_E36_ETEC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1013148 JL022_RS23840 WP_000644904.1 4903540..4904565(+) (cytR) [Escherichia coli isolate L3_E36_ETEC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGCATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628