Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK22_RS14445 Genome accession   NZ_AP027506
Coordinates   2931664..2932293 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LR-27     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2926664..2937293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK22_RS14430 (VEE09_27800) helD 2926906..2928960 (-) 2055 WP_001295354.1 DNA helicase IV -
  AABK22_RS14435 (VEE09_27810) yccF 2929083..2929529 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABK22_RS14440 (VEE09_27820) yccS 2929539..2931701 (+) 2163 WP_000875061.1 YccS family putative transporter -
  AABK22_RS14445 (VEE09_27830) sxy/tfoX 2931664..2932293 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK22_RS14450 (VEE09_27840) sulA 2932512..2933021 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABK22_RS14455 (VEE09_27860) ompA 2933378..2934418 (+) 1041 WP_000750416.1 porin OmpA -
  AABK22_RS14460 (VEE09_27870) matP 2934494..2934946 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABK22_RS14465 (VEE09_27880) ycbZ 2935132..2936892 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=101311 AABK22_RS14445 WP_000839153.1 2931664..2932293(-) (sxy/tfoX) [Escherichia coli strain LR-27]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101311 AABK22_RS14445 WP_000839153.1 2931664..2932293(-) (sxy/tfoX) [Escherichia coli strain LR-27]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment