Detailed information NTG1013099

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JL022_RS05405
• Genome accession: NZ_LR882997
• Coordinates: 1117779..1118771 (+)
• Length: 330 a.a.
• NCBI ID: WP_096955324.1
• Uniprot ID: -
• Organism: Escherichia coli isolate L3_E36_ETEC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1112779..1123771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JL022_RS05375 (ETECE36_01700)	ispD	1112840..1113550 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JL022_RS05380 (ETECE36_01701)	ispF	1113550..1114029 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JL022_RS05385 (ETECE36_01702)	truD	1114026..1115075 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
JL022_RS05390 (ETECE36_01703)	surE	1115056..1115817 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
JL022_RS05395 (ETECE36_01704)	pcm	1115811..1116437 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JL022_RS05400 (ETECE36_01705)	nlpD	1116622..1117716 (+)	1095	WP_353049090.1	murein hydrolase activator NlpD	-
JL022_RS05405 (ETECE36_01706)	rpoS	1117779..1118771 (+)	993	WP_096955324.1	RNA polymerase sigma factor RpoS	Regulator
JL022_RS05410 (ETECE36_01707)	-	1118892..1119299 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
JL022_RS05415 (ETECE36_01708)	-	1119446..1120039 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
JL022_RS05420 (ETECE36_01709)	-	1120039..1121466 (+)	1428	WP_000863224.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
JL022_RS05425 (ETECE36_01710)	-	1121477..1121713 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
JL022_RS05430 (ETECE36_01711)	ygbN	1121753..1123117 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37988.89 Da
• Isoelectric Point: 4.5597

>NTDB_id=1013099 JL022_RS05405 WP_096955324.1 1117779..1118771(+) (rpoS) [Escherichia coli isolate L3_E36_ETEC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTLLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1013099 JL022_RS05405 WP_096955324.1 1117779..1118771(+) (rpoS) [Escherichia coli isolate L3_E36_ETEC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCTGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712