Detailed information NTG0101308

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HPOKI422_RS01535
• Genome accession: NZ_CP006824
• Coordinates: 314241..316811 (+)
• Length: 856 a.a.
• NCBI ID: WP_025309634.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki422
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 309241..321811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI422_RS01510 (HPOKI422_01590)	-	309464..310123 (+)	660	WP_025366337.1	MotE family protein	-
HPOKI422_RS01515 (HPOKI422_01595)	rseP	310123..311169 (+)	1047	WP_120916319.1	RIP metalloprotease RseP	-
HPOKI422_RS01520 (HPOKI422_01600)	xseA	311182..312444 (+)	1263	WP_025309632.1	exodeoxyribonuclease VII large subunit	-
HPOKI422_RS01525 (HPOKI422_01605)	-	312718..313413 (+)	696	WP_025366338.1	BsaWI family type II restriction enzyme	-
HPOKI422_RS01530 (HPOKI422_01610)	-	313410..314168 (+)	759	WP_025309633.1	DNA-methyltransferase	-
HPOKI422_RS01535 (HPOKI422_01615)	clpC	314241..316811 (+)	2571	WP_025309634.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
HPOKI422_RS01540 (HPOKI422_01620)	-	316867..317586 (+)	720	WP_025276683.1	cytochrome c biogenesis protein CcdA	-
HPOKI422_RS01545 (HPOKI422_01625)	-	317596..318732 (+)	1137	WP_025276684.1	amidohydrolase family protein	-
HPOKI422_RS01550 (HPOKI422_01630)	mqnF	318717..319946 (+)	1230	WP_025366339.1	aminofutalosine deaminase	-
HPOKI422_RS01555 (HPOKI422_01635)	-	320007..320249 (+)	243	WP_000780044.1	nuclease	-
HPOKI422_RS01560 (HPOKI422_01640)	miaB	320259..321572 (+)	1314	WP_025366340.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96518.53 Da
• Isoelectric Point: 6.7208

>NTDB_id=101308 HPOKI422_RS01535 WP_025309634.1 314241..316811(+) (clpC) [Helicobacter pylori oki422]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPMHMLFAMLNNSQGILIQALQKMPVDIEALKLSVQSELNKFAKVSQISK
QNIQLNQALIQSLENAQGLMAKRGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGATIQGKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSTNVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALVASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEK
HSISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASDALLEESLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSYAIINIVGILFENIQKKALERGINITLDEKAKKL
IAKAGFDRFYGARPLKRALYEMVEDKLAELILEDKVKENGSVAFVVENNEIVPKIK

Nucleotide

• Length: 2571 bp

>NTDB_id=101308 HPOKI422_RS01535 WP_025309634.1 314241..316811(+) (clpC) [Helicobacter pylori oki422]
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTTTAGCTTTACACCATAAAAA
CGCTGAAGTAACGCCCATGCACATGCTTTTTGCCATGCTTAATAACTCCCAAGGCATTCTCATTCAGGCCTTACAAAAAA
TGCCTGTGGATATTGAAGCTTTAAAGCTTAGCGTTCAAAGCGAGTTGAATAAGTTTGCTAAAGTTTCACAAATCAGCAAG
CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTGGAAAACGCTCAAGGCTTGATGGCTAAAAGGGGCGATTCTTT
CATTGCTACAGACGTGTATCTTTTGGCGAATATGAGCCTTTTTGAAAGCGTTTTGAAACCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCGCGACTATTCAAGGTAAAAACGATGATTCCAATTTGGAAAGTTTGGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCCTAGAAAATAAGCTGGATCCCGTGATCGGAAGAGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGCGAGCCTGGAGTGGGGAAAACGGCGGTTG
TGGAAGGTTTGGCCCAACGCATTGTGAATAAAGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATCTA
AGCTTATTGGTGGCTGGAGCCAAATACAGAGGCGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG
CACAAATGTGATTTTATTCATTGATGAAATCCATACGATCGTGGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACCCTGAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCATTGCAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAGATCTT
AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACCATCAATGACTCCGCGCTCGTAGCGAGCGCTAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCTCAATTAAAAATG
CAAATGGAATCAGAGCCGGCAAAACTCTCCAGCGTTAAGCGCTCCATCCAAAGACTGGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC
AATTAGAAGCGCAATTTGAAAACGAAAAAGAAGTATTCAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAACAA
AAAGAAAGAAGAAGAATTGCAGCACAAATGGGAAGCGATGCAACAAAACGGGGCGTTGTTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCACATCCCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGTTTCCTCTTTTTAGGGCCAACAGGGGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCACAATTCTTGTTTGATAGCGATAAAAACCTTATACGAATTGACATGAGCGAATATTTGGAAAAG
CACTCTATAAGCCGTCTTATTGGAGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG
CAGAAAGCCTTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAATCTCTTGTTGCAGGTTT
TAGATGAGGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGACGCGCTTTTGGAAGAAAGTTTGAGTGAAGCTGATAAACAAAAAGCGATTAAAGAGAGCTTGAGGCAATTTTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCTCTAGATAGTTATGCTATCATAAATATCGTGG
GGATACTCTTTGAAAACATTCAAAAAAAAGCACTTGAAAGGGGCATTAATATAACCCTAGACGAAAAGGCAAAAAAATTG
ATCGCTAAAGCGGGATTTGACAGATTTTATGGCGCTAGACCCCTAAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAAGTTAAAGAGAATGGCAGCGTGGCATTTGTGGTAGAAAATAACGAGATTGTGCCTA
AGATTAAGTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-142)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

• AAA lid domain (AAA_lid_9) (339-440)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.07	100	0.439
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.023	100	0.422