Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABQ274_RS10805 Genome accession   NZ_CP159281
Coordinates   2139395..2140756 (+) Length   453 a.a.
NCBI ID   WP_353727153.1    Uniprot ID   -
Organism   Lactococcus lactis strain FNZ339     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2134395..2145756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ274_RS10760 (ABQ274_10760) - 2134687..2135334 (+) 648 WP_010906298.1 adenylate kinase -
  ABQ274_RS10765 (ABQ274_10765) infA 2135631..2135849 (+) 219 WP_003130554.1 translation initiation factor IF-1 -
  ABQ274_RS10770 (ABQ274_10770) rpmJ 2135903..2136019 (+) 117 WP_001808836.1 50S ribosomal protein L36 -
  ABQ274_RS10775 (ABQ274_10775) rpsM 2136037..2136402 (+) 366 WP_003130555.1 30S ribosomal protein S13 -
  ABQ274_RS10780 (ABQ274_10780) rpsK 2136423..2136806 (+) 384 WP_010906297.1 30S ribosomal protein S11 -
  ABQ274_RS10785 (ABQ274_10785) - 2136854..2137792 (+) 939 WP_003130557.1 DNA-directed RNA polymerase subunit alpha -
  ABQ274_RS10790 (ABQ274_10790) rplQ 2137811..2138191 (+) 381 WP_003130558.1 50S ribosomal protein L17 -
  ABQ274_RS10800 (ABQ274_10800) - 2139006..2139233 (+) 228 WP_010906294.1 heavy-metal-associated domain-containing protein -
  ABQ274_RS10805 (ABQ274_10805) radA 2139395..2140756 (+) 1362 WP_353727153.1 DNA repair protein RadA Machinery gene
  ABQ274_RS10810 (ABQ274_10810) - 2140800..2141486 (-) 687 WP_012898598.1 YoaK family protein -
  ABQ274_RS10815 (ABQ274_10815) - 2141717..2142802 (+) 1086 WP_003129885.1 PIN/TRAM domain-containing protein -
  ABQ274_RS10820 (ABQ274_10820) - 2142867..2143496 (+) 630 WP_003129888.1 hypothetical protein -
  ABQ274_RS10825 (ABQ274_10825) - 2143616..2143978 (+) 363 WP_003129889.1 PadR family transcriptional regulator -
  ABQ274_RS10830 (ABQ274_10830) - 2143965..2144294 (+) 330 WP_031560560.1 DUF1048 domain-containing protein -
  ABQ274_RS10835 (ABQ274_10835) - 2144298..2144621 (+) 324 WP_003129893.1 DUF1048 domain-containing protein -
  ABQ274_RS10840 (ABQ274_10840) - 2144713..2145207 (-) 495 WP_003129897.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49966.34 Da        Isoelectric Point: 5.1748

>NTDB_id=1013076 ABQ274_RS10805 WP_353727153.1 2139395..2140756(+) (radA) [Lactococcus lactis strain FNZ339]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPLKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGWVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIQVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1013076 ABQ274_RS10805 WP_353727153.1 2139395..2140756(+) (radA) [Lactococcus lactis strain FNZ339]
ATGGCGAAGAAAAAATCATCATTTGTTTGTCAAAATTGTGGCTATAAGTCTGCAAAATACTTAGGACGTTGTCCAAACTG
TGGCGAATGGTCTTCTTTTGTTGAAGAAGTTGAAGTCCAAGAAGTTAAAAATCAACGTGTTTCAATGACTGGCGAACGTT
CAAAACCATTGAAGCTAGATGAAGTCGAATTATTTGATACTCCTCGGATTGAAACGGACCTAGATGAATTTAATCGTGTA
TTAGGAGGGGGCGTCGTTCCTGGTTCATTAGTTCTGATTGGGGGAGACCCTGGGATAGGTAAATCAACCTTACTTTTACA
GGTTTCTACTCAATTGGCTTCTAGAGGGCGTGTGCTTTATGTGAGTGGTGAAGAATCAGCCCAACAAATTAAACTAAGAG
CTGAGCGTTTAGGAGATATTGACCGTGACTTTTATCTCTATGCTGAAACAAATATGCAGTCGATTCGTGCAGAAGTTGAG
CGTTTAAAACCTAACTTCTTAATTATTGATTCCATTCAAACAATCATGACACCAGAAATTCAATCAACTCAAGGCTCTGT
AAGTCAAGTTCGTGAAGTGACTGGAGAATTGATGCAAATTGCTAAAACGAATGATATTGCGACTTTTATTGTTGGTCATG
TGACTAAAGAAGGACAGCTGGCTGGTCCAAGGATGTTGGAGCACATGGTTGATACGGTGCTGTATTTTGAAGGAGAACGA
AATAATACATTTAGAATTCTTCGTGCTGTAAAAAACCGTTTTGGCTCAACTAATGAAATTGGAATCTTTGAGATGCAGGG
TCATGGCTGGGTCGAAGTGACTAATCCCTCAGAGGTCTTTTTAGAAGAACGTTTAGAGGGCTCAACTGGATCTGCAATTG
TTTGTGCACTTGAAGGAACACGGCCTATACTAGTTGAAATACAAGCACTGACGACACCGACAATGTTTGGAAATGCTAAA
AGGACGACCTCAGGCCTAGATTTTAACCGTGTAAGTTTAATTATGGCGGTGCTTGAGAAGAGAACGGGGCTCTTGATGCA
AAATCAAGATGCCTACCTCAAATCTGCGGGGGGAGTAAAATTGGATGAGCCAGCCATTGACCTCGCGGTTGCGGTTGCTG
TGGCTTCAAGTTATAAAGAACTTCCAACAGATGCGCGTGAATGTTTTATTGGTGAAATTGGTTTAACGGGTGAAATTCGT
CGGGTGACCCGAATTGAACAAAGATTAAATGAAGCTGCAAAACTAGGTTTTAAAAAAGTATATGCTCCTAAAAATTCAAT
TGTAGGGATTGATATTCCTGAACAGATTCAAGTGATTGGAGTAACAACTTTAACTGAATGTTTAAAACTAGTCTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.015

100

0.81
  radA Streptococcus pneumoniae D39

81.015

100

0.81
  radA Streptococcus pneumoniae R6

81.015

100

0.81
  radA Streptococcus pneumoniae TIGR4

81.015

100

0.81
  radA Streptococcus mitis SK321

81.015

100

0.81
  radA Streptococcus mitis NCTC 12261

80.795

100

0.808
  radA Bacillus subtilis subsp. subtilis str. 168

61.269

100

0.618

Multiple sequence alignment