Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPOKI422_RS00770 Genome accession   NZ_CP006824
Coordinates   160589..161047 (-) Length   152 a.a.
NCBI ID   WP_025275532.1    Uniprot ID   -
Organism   Helicobacter pylori oki422     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 155589..166047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI422_RS00755 (HPOKI422_00805) - 155981..156760 (-) 780 WP_025276611.1 glycosyltransferase family 2 protein -
  HPOKI422_RS00760 (HPOKI422_00810) tlpB 156791..158488 (-) 1698 WP_025366298.1 methyl-accepting chemotaxis protein TlpB -
  HPOKI422_RS00765 (HPOKI422_00815) - 158701..160446 (-) 1746 WP_025275531.1 bifunctional metallophosphatase/5'-nucleotidase -
  HPOKI422_RS00770 (HPOKI422_00820) luxS 160589..161047 (-) 459 WP_025275532.1 S-ribosylhomocysteine lyase Regulator
  HPOKI422_RS00775 (HPOKI422_00825) - 161085..162227 (-) 1143 WP_025275533.1 cystathionine gamma-synthase -
  HPOKI422_RS00780 (HPOKI422_00830) - 162248..163165 (-) 918 WP_025275534.1 O-acetylserine-dependent cystathionine beta-synthase -
  HPOKI422_RS00785 (HPOKI422_00835) - 163279..163858 (+) 580 Protein_144 hypothetical protein -
  HPOKI422_RS00790 (HPOKI422_00840) dnaK 164092..165954 (-) 1863 WP_025366299.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17293.63 Da        Isoelectric Point: 6.4914

>NTDB_id=101304 HPOKI422_RS00770 WP_025275532.1 160589..161047(-) (luxS) [Helicobacter pylori oki422]
MKMNVESFNLDHTKVKAPYVRVADRKKGANGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLAHAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=101304 HPOKI422_RS00770 WP_025275532.1 160589..161047(-) (luxS) [Helicobacter pylori oki422]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACTAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGTGCTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAACCCAACCAAGATCACATGGACATGCCTAGCT
TACATTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGCTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCAC
AAAATTTAGCACACGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.429

92.105

0.382

Multiple sequence alignment