Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABVN21_RS27045 Genome accession   NZ_CP159258
Coordinates   5968840..5970207 (+) Length   455 a.a.
NCBI ID   WP_339555955.1    Uniprot ID   A0AAU8E4I9
Organism   Pseudomonas sp. MYb327     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5963840..5975207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS27020 (ABVN21_27020) - 5964387..5964554 (+) 168 WP_339555960.1 DUF2474 domain-containing protein -
  ABVN21_RS27025 (ABVN21_27025) - 5964628..5965752 (-) 1125 WP_339555951.1 methyltransferase -
  ABVN21_RS27030 (ABVN21_27030) - 5965917..5966648 (-) 732 WP_339555952.1 LuxR family transcriptional regulator -
  ABVN21_RS27035 (ABVN21_27035) - 5967003..5967779 (+) 777 WP_339555953.1 ferredoxin--NADP reductase -
  ABVN21_RS27040 (ABVN21_27040) mscL 5967816..5968238 (-) 423 WP_339555954.1 large-conductance mechanosensitive channel protein MscL -
  ABVN21_RS27045 (ABVN21_27045) radA 5968840..5970207 (+) 1368 WP_339555955.1 DNA repair protein RadA Machinery gene
  ABVN21_RS27050 (ABVN21_27050) - 5970227..5970595 (-) 369 WP_339555956.1 PilZ domain-containing protein -
  ABVN21_RS27055 (ABVN21_27055) - 5970755..5972821 (+) 2067 WP_339555957.1 carbon starvation CstA family protein -
  ABVN21_RS27060 (ABVN21_27060) - 5972836..5973033 (+) 198 WP_007895266.1 YbdD/YjiX family protein -
  ABVN21_RS27065 (ABVN21_27065) yjiA 5973156..5974127 (+) 972 WP_339555034.1 GTPase -
  ABVN21_RS27070 (ABVN21_27070) - 5974468..5974620 (+) 153 WP_339555035.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48758.28 Da        Isoelectric Point: 6.8987

>NTDB_id=1012948 ABVN21_RS27045 WP_339555955.1 5968840..5970207(+) (radA) [Pseudomonas sp. MYb327]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKVMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1012948 ABVN21_RS27045 WP_339555955.1 5968840..5970207(+) (radA) [Pseudomonas sp. MYb327]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCTCAACCTTCCCGAAGTGGGCCGGCCAGTGCGGTGAATG
CGGCGCCTGGAACACATTGACCGAGACCATGGTGGAGAGCGGCGGGGCCGCGGCACCCAGCGGTCGCACCGGTTGGACCG
GCCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATTCCGCGCTTTTCCACCGCATCCAGCGAGCTG
GATCGAGTGCTGGGTGGTGGCTTGGTCGACGGTTCGGTTGTGCTGATCGGCGGTGACCCCGGTATCGGCAAGTCGACCAT
TCTGTTGCAGACCTTGTGCAACCTCGCGAAGGTTATGCCGGCGCTGTATGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCAGGCGCCTGGGGTTGCCTCAGGATCAGCTTCGCGTCATGACCGAAACCTGTATCGAAACCATCATCGCC
ACCGCCCGGCTGGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCGCC
GGGCGGCGTGTCCCAGGTTCGCGAAAGCGCGGCGTTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTGACGAAAGAAGGTGCGCTGGCCGGTCCGCGCGTTCTGGAGCATATGGTCGACACGGTCCTGTATTTCGAA
GGCGAATCCGATGGGCGTTTGCGCCTCCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTTAACGAATTGGGCGTCTTTGG
CATGACCGATAAAGGCTTGAAAGAAGTTTCAAACCCTTCGGCGATCTTTCTGACACGTGCTCAGGAGGAGGTCCCGGGTA
GTGTGGTCATGGCAACCTGGGAAGGGACGCGACCGATGCTGGTGGAAGTCCAGGCGTTGGTGGATGACAGTCATCTGGCC
AATCCGCGTCGGGTAACGCTGGGCCTGGACCAGAACCGACTGGCGATGTTGCTGGCGGTCCTGCATCGTCACGGCGGCAT
TCCTACCCATGATCAGGACGTATTCCTCAACGTAGTCGGCGGCGTCAAAGTGCTGGAAACGGCCTCCGACCTGGCGTTGA
TGGCCGCGGTGATGTCGAGTTTGCGCAACCGTCCGTTGCCCCATGATTTGCTGGTGTTCGGTGAGGTAGGCCTGTCCGGC
GAGGTGCGTCCGGTGCCGAGTGGCCAAGAGCGCCTGAAAGAAGCGGCCAAACACGGCTTCAAGCGTGCCATCGTACCGAA
GGGCAATGCACCGAAAGAAGCTCCGCCGGGATTGCAGATCATTGCAGTAACCCGTCTGGAACAGGCACTCGACGCGTTGT
TTGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment