Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABVN21_RS16355 Genome accession   NZ_CP159258
Coordinates   3637315..3637950 (-) Length   211 a.a.
NCBI ID   WP_034149975.1    Uniprot ID   A0A7Y6ECC8
Organism   Pseudomonas sp. MYb327     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3632315..3642950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS16320 (ABVN21_16320) - 3632709..3633179 (-) 471 WP_034149969.1 (2Fe-2S)-binding protein -
  ABVN21_RS16325 (ABVN21_16325) murB 3633428..3634447 (-) 1020 WP_339555621.1 UDP-N-acetylmuramate dehydrogenase -
  ABVN21_RS16330 (ABVN21_16330) - 3634444..3634908 (-) 465 WP_339555620.1 low molecular weight protein-tyrosine-phosphatase -
  ABVN21_RS16335 (ABVN21_16335) kdsB 3634908..3635672 (-) 765 WP_339555619.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABVN21_RS16340 (ABVN21_16340) - 3635669..3635854 (-) 186 WP_007945752.1 Trm112 family protein -
  ABVN21_RS16345 (ABVN21_16345) lpxK 3635880..3636890 (-) 1011 WP_339555618.1 tetraacyldisaccharide 4'-kinase -
  ABVN21_RS16350 (ABVN21_16350) - 3636890..3637318 (-) 429 WP_339555617.1 biopolymer transporter ExbD -
  ABVN21_RS16355 (ABVN21_16355) exbB 3637315..3637950 (-) 636 WP_034149975.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABVN21_RS16360 (ABVN21_16360) comA 3638049..3640283 (-) 2235 WP_339555616.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABVN21_RS16365 (ABVN21_16365) - 3640420..3640935 (+) 516 WP_339555615.1 DUF2062 domain-containing protein -
  ABVN21_RS16370 (ABVN21_16370) - 3641159..3641938 (-) 780 WP_103406458.1 ABC transporter permease -
  ABVN21_RS16375 (ABVN21_16375) - 3641935..3642867 (-) 933 WP_339555614.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22871.08 Da        Isoelectric Point: 7.3615

>NTDB_id=1012931 ABVN21_RS16355 WP_034149975.1 3637315..3637950(-) (exbB) [Pseudomonas sp. MYb327]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1012931 ABVN21_RS16355 WP_034149975.1 3637315..3637950(-) (exbB) [Pseudomonas sp. MYb327]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATTGCGGCCATGGCGATTGTTGC
CGAGCGTCTCTGGACCCTGCGAGCCAGTCGTGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAACAAGGAAAAACTCAAGGAACTGCGCGCCAACTCGCCGCTTGGCGAAATCCTGGCGGCTGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGCGTCATCCATGAACTTGAGCGCTACAT
CAACGCCCTCGGTACTATCGCGGCGATGGCGCCGTTGCTGGGCCTGCTGGGTACGGTGCTGGGTATGATCGATATTTTCA
GCGCGTTCATGGGTTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCGAAAGCGCTGATTACTACGGCT
GCGGGCCTGATGGTCGGTATCCCGTCGGTGTTTTTCCACCGATTCCTGCAGCGCCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTCGTCCAGGGTGACCGTGACGTAGACCTGGCTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y6ECC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment