Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK20_RS14625 Genome accession   NZ_AP027500
Coordinates   3066594..3067223 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LR-25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3061594..3072223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK20_RS14605 (VEE02_27960) ycbZ 3061984..3063744 (-) 1761 WP_000156526.1 Lon protease family protein -
  AABK20_RS14610 (VEE02_27970) matP 3063930..3064382 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AABK20_RS14615 (VEE02_27980) ompA 3064457..3065509 (-) 1053 WP_000750419.1 porin OmpA -
  AABK20_RS14620 (VEE02_28000) sulA 3065866..3066375 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABK20_RS14625 (VEE02_28010) sxy/tfoX 3066594..3067223 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK20_RS14630 (VEE02_28020) yccS 3067186..3069348 (-) 2163 WP_000875044.1 YccS family putative transporter -
  AABK20_RS14635 (VEE02_28030) yccF 3069358..3069804 (-) 447 WP_001261231.1 YccF domain-containing protein -
  AABK20_RS14640 (VEE02_28040) helD 3069927..3071981 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=101292 AABK20_RS14625 WP_000839153.1 3066594..3067223(+) (sxy/tfoX) [Escherichia coli strain LR-25]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101292 AABK20_RS14625 WP_000839153.1 3066594..3067223(+) (sxy/tfoX) [Escherichia coli strain LR-25]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment