Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   IHO92_RS23290 Genome accession   NZ_LR882493
Coordinates   4779489..4780481 (-) Length   330 a.a.
NCBI ID   WP_000224461.1    Uniprot ID   -
Organism   Escherichia coli isolate 2016-17-292     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4774489..4785481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHO92_RS23280 (QREC_QR292_04616) yieP 4777381..4778073 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  IHO92_RS23285 (QREC_QR292_04617) mdtD 4778096..4779523 (+) 1428 WP_001280887.1 multidrug transporter subunit MdtD -
  IHO92_RS23290 (QREC_QR292_04618) cytR 4779489..4780481 (-) 993 WP_000224461.1 ribose operon transcriptional repressor RbsR Regulator
  IHO92_RS23295 (QREC_QR292_04619) rbsK 4780485..4781414 (-) 930 WP_001300603.1 ribokinase -
  IHO92_RS23300 (QREC_QR292_04620) rbsB 4781540..4782430 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  IHO92_RS23305 (QREC_QR292_04621) rbsC 4782455..4783420 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  IHO92_RS23310 (QREC_QR292_04622) rbsA 4783425..4784930 (-) 1506 WP_000387756.1 ribose ABC transporter ATP-binding protein RbsA -
  IHO92_RS23315 (QREC_QR292_04623) rbsD 4784938..4785357 (-) 420 WP_001364631.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36541.85 Da        Isoelectric Point: 5.0626

>NTDB_id=1012835 IHO92_RS23290 WP_000224461.1 4779489..4780481(-) (cytR) [Escherichia coli isolate 2016-17-292]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPALLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1012835 IHO92_RS23290 WP_000224461.1 4779489..4780481(-) (cytR) [Escherichia coli isolate 2016-17-292]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCTCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364