Detailed information NTG0101262

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPOKI154_RS02450
• Genome accession: NZ_CP006823
• Coordinates: 500625..501827 (-)
• Length: 400 a.a.
• NCBI ID: WP_025366790.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki154
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 495625..506827

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI154_RS02425 (HPOKI154_02540)	-	495707..496225 (-)	519	WP_025222671.1	hypothetical protein	-
HPOKI154_RS02430 (HPOKI154_02545)	-	496222..497166 (-)	945	WP_025222672.1	ATPase, T2SS/T4P/T4SS family	-
HPOKI154_RS02435 (HPOKI154_02550)	-	497171..497443 (-)	273	WP_000883379.1	hypothetical protein	-
HPOKI154_RS02440 (HPOKI154_02555)	-	497461..498436 (-)	976	Protein_479	hypothetical protein	-
HPOKI154_RS02445 (HPOKI154_02560)	-	498449..500641 (-)	2193	WP_025222673.1	hypothetical protein	-
HPOKI154_RS02450 (HPOKI154_02565)	comB10	500625..501827 (-)	1203	WP_025366790.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI154_RS02455 (HPOKI154_02570)	-	501824..503491 (-)	1668	WP_025366791.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HPOKI154_RS02460 (HPOKI154_02575)	-	503488..504604 (-)	1117	Protein_483	VirB8/TrbF family protein	-
HPOKI154_RS02465 (HPOKI154_02580)	-	504597..504731 (-)	135	WP_000738749.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44678.32 Da
• Isoelectric Point: 9.9914

>NTDB_id=101262 HPOKI154_RS02450 WP_025366790.1 500625..501827(-) (comB10) [Helicobacter pylori oki154]
MNKSLLKKIGLVIGGFGALMALGLLANKGSDNNNKEEIFQVNESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNIRLKPLEPTKPATKPETEYGADSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMPRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=101262 HPOKI154_RS02450 WP_025366790.1 500625..501827(-) (comB10) [Helicobacter pylori oki154]
ATGAATAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAGACAATAACAATAAAGAAGAAATCTTTCAAGTAAATGAGAGTAAATTCCCACTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
TACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGCGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATTGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCCAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTCCTAGCGGAGTTTTTTAAAGAGAAAAAACCGCTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.266	99.5	0.53