Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   HPOKI154_RS01915 Genome accession   NZ_CP006823
Coordinates   383955..384329 (-) Length   124 a.a.
NCBI ID   WP_015086992.1    Uniprot ID   -
Organism   Helicobacter pylori oki154     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 378955..389329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI154_RS01895 (HPOKI154_01990) pssA 380103..380816 (-) 714 WP_001122213.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  HPOKI154_RS08530 (HPOKI154_01995) - 380806..381055 (-) 250 Protein_370 hypothetical protein -
  HPOKI154_RS01905 (HPOKI154_02000) ftsH 381058..382956 (-) 1899 WP_000805279.1 ATP-dependent zinc metalloprotease FtsH -
  HPOKI154_RS01910 (HPOKI154_02005) prmA 382965..383942 (-) 978 WP_025366762.1 50S ribosomal protein L11 methyltransferase -
  HPOKI154_RS01915 (HPOKI154_02010) chpA 383955..384329 (-) 375 WP_015086992.1 chemotaxis response regulator CheY Regulator
  HPOKI154_RS01920 (HPOKI154_02015) - 384619..385221 (+) 603 WP_025222595.1 outer membrane protein -
  HPOKI154_RS01930 (HPOKI154_02025) - 385353..385760 (-) 408 WP_025222596.1 hypothetical protein -
  HPOKI154_RS01935 (HPOKI154_02030) - 385763..386005 (-) 243 WP_015643034.1 PP0621 family protein -
  HPOKI154_RS01940 (HPOKI154_02035) rsmG 385999..386535 (-) 537 WP_025366763.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HPOKI154_RS01945 (HPOKI154_02040) queA 386532..387569 (-) 1038 WP_025366764.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HPOKI154_RS01950 (HPOKI154_02045) tatC 387573..388331 (-) 759 WP_025366765.1 twin-arginine translocase subunit TatC -
  HPOKI154_RS01955 (HPOKI154_02050) tatB 388324..388806 (-) 483 WP_025222600.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13833.13 Da        Isoelectric Point: 4.6381

>NTDB_id=101259 HPOKI154_RS01915 WP_015086992.1 383955..384329(-) (chpA) [Helicobacter pylori oki154]
MKLLVVDDSSTMRRIIGNTLSRLGYEDILEAEHGVEALEKLNANPDIKVLITDWNMPEMNGLDLVIKVRADERFKEIPII
MITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND

Nucleotide


Download         Length: 375 bp        

>NTDB_id=101259 HPOKI154_RS01915 WP_015086992.1 383955..384329(-) (chpA) [Helicobacter pylori oki154]
TTGAAACTACTGGTAGTAGATGATAGCTCAACTATGAGGAGAATTATTGGAAACACACTTTCACGCTTAGGCTATGAAGA
TATTTTAGAAGCTGAGCATGGGGTGGAAGCTTTGGAGAAACTAAACGCTAATCCGGACATTAAGGTGCTTATCACAGATT
GGAACATGCCTGAAATGAACGGCTTGGATCTTGTTATAAAGGTGCGTGCGGATGAGCGGTTTAAAGAAATCCCTATTATT
ATGATCACCACAGAGGGCGGTAAGGCTGAGGTCATTACGGCTTTGAAAGCGGGCGTGAATAATTATATTGTGAAGCCTTT
TACCCCCCAGGTTTTGAAAGAAAAATTAGAGGTTGTTTTAGGGACAAACGATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

37.815

95.968

0.363