Detailed information NTG1012589

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IHP20_RS19965
• Genome accession: NZ_LR882050
• Coordinates: 4154311..4155303 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 2016-02-324
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4149311..4160303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHP20_RS19935 (QREC_QR324_03936)	ispD	4149372..4150082 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IHP20_RS19940 (QREC_QR324_03937)	ispF	4150082..4150561 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IHP20_RS19945 (QREC_QR324_03938)	truD	4150558..4151607 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
IHP20_RS19950 (QREC_QR324_03939)	surE	4151588..4152349 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IHP20_RS19955 (QREC_QR324_03940)	pcm	4152343..4152969 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IHP20_RS19960 (QREC_QR324_03941)	nlpD	4153154..4154248 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IHP20_RS19965 (QREC_QR324_03942)	rpoS	4154311..4155303 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IHP20_RS19970 (QREC_QR324_03943)	ygbN	4155397..4156761 (-)	1365	WP_000104459.1	GntP family transporter	-
IHP20_RS19975 (QREC_QR324_03944)	ygbM	4156850..4157626 (-)	777	WP_001136916.1	HPr family phosphocarrier protein	-
IHP20_RS19980 (QREC_QR324_03945)	ygbL	4157631..4158269 (-)	639	WP_001278994.1	aldolase	-
IHP20_RS19985 (QREC_QR324_03946)	otnK	4158266..4159528 (-)	1263	WP_000590390.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1012589 IHP20_RS19965 WP_000081550.1 4154311..4155303(+) (rpoS) [Escherichia coli isolate 2016-02-324]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1012589 IHP20_RS19965 WP_000081550.1 4154311..4155303(+) (rpoS) [Escherichia coli isolate 2016-02-324]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715