Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPOKI154_RS00575 Genome accession   NZ_CP006823
Coordinates   110890..111357 (-) Length   155 a.a.
NCBI ID   WP_025222399.1    Uniprot ID   -
Organism   Helicobacter pylori oki154     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 105890..116357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI154_RS00555 (HPOKI154_00590) - 106136..106897 (+) 762 WP_025222397.1 outer membrane beta-barrel protein -
  HPOKI154_RS00560 (HPOKI154_00595) - 106869..107651 (-) 783 WP_025313558.1 glycosyltransferase family 2 protein -
  HPOKI154_RS00565 (HPOKI154_00600) tlpB 107682..109383 (-) 1702 Protein_107 methyl-accepting chemotaxis protein TlpB -
  HPOKI154_RS00570 (HPOKI154_00605) - 109582..110709 (-) 1128 Protein_108 5'-nucleotidase C-terminal domain-containing protein -
  HPOKI154_RS00575 (HPOKI154_00610) luxS 110890..111357 (-) 468 WP_025222399.1 S-ribosylhomocysteine lyase Regulator
  HPOKI154_RS00580 (HPOKI154_00615) - 111392..112534 (-) 1143 WP_015428566.1 cystathionine gamma-synthase -
  HPOKI154_RS00585 (HPOKI154_00620) - 112555..113472 (-) 918 WP_025313562.1 O-acetylserine-dependent cystathionine beta-synthase -
  HPOKI154_RS00590 (HPOKI154_00625) - 113580..114158 (+) 579 WP_025313563.1 hypothetical protein -
  HPOKI154_RS00595 (HPOKI154_00630) dnaK 114297..116159 (-) 1863 WP_015428568.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17678.15 Da        Isoelectric Point: 6.6039

>NTDB_id=101249 HPOKI154_RS00575 WP_025222399.1 110890..111357(-) (luxS) [Helicobacter pylori oki154]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDDYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRNEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=101249 HPOKI154_RS00575 WP_025222399.1 110890..111357(-) (luxS) [Helicobacter pylori oki154]
ATGAAAACGCCAAAAATGAATGTAGAAAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCACGCTAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAGACGGGATTTTATCTCACGGTGTTAAACCATGACGATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCACAGAATTTAGCACGCGCTTTTTTAGACAAACGCAATGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment