Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JOA52_RS14925 Genome accession   NZ_LR881953
Coordinates   3338318..3339739 (+) Length   473 a.a.
NCBI ID   WP_055561464.1    Uniprot ID   -
Organism   Streptomyces sp. KY75 isolate Streptomyces sp. KY75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3333318..3344739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA52_RS14905 (STKY75_3254) - 3333367..3334242 (-) 876 WP_030564790.1 sugar phosphate isomerase/epimerase -
  JOA52_RS14910 (STKY75_3255) - 3334333..3335283 (-) 951 WP_202591126.1 Ppx/GppA phosphatase family protein -
  JOA52_RS14915 (STKY75_3256) - 3335323..3336165 (+) 843 WP_030564792.1 hypothetical protein -
  JOA52_RS14920 - 3336199..3338170 (-) 1972 Protein_2958 hypothetical protein -
  JOA52_RS14925 (STKY75_3259) radA/sms 3338318..3339739 (+) 1422 WP_055561464.1 DNA repair protein RadA Machinery gene
  JOA52_RS14930 (STKY75_3260) disA 3339821..3340945 (+) 1125 WP_003968311.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  JOA52_RS14935 (STKY75_3261) - 3341098..3341868 (-) 771 WP_202592523.1 hypothetical protein -
  JOA52_RS14940 (STKY75_3262) - 3342194..3343108 (+) 915 WP_030564801.1 A/G-specific adenine glycosylase -
  JOA52_RS14945 (STKY75_3263) - 3343258..3344055 (+) 798 WP_076967053.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49893.07 Da        Isoelectric Point: 8.4953

>NTDB_id=1012473 JOA52_RS14925 WP_055561464.1 3338318..3339739(+) (radA/sms) [Streptomyces sp. KY75 isolate Streptomyces sp. KY75]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEDHRTLYVTAEESASQVRMRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVADMGDALRVLPRRSRQEAPQPRQEDNARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1012473 JOA52_RS14925 WP_055561464.1 3338318..3339739(+) (radA/sms) [Streptomyces sp. KY75 isolate Streptomyces sp. KY75]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCCAAATGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACCACCGCGGCCG
GCCGGGTCTCCACCGCCGCCGTGCCGATCGGCCAGGTCGACAGCCGCCAGGCCACCGCGCGCTCGACCGGCGTCGGTGAG
CTGGACCGGGTGCTGGGCGGCGGGCTCGTGCCGGGGGCCGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGAGGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGATGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGACCTGTCGGCCGTG
CTCGGGCATCTGGACGCGGTGAAGCCCTCGCTGCTGATCCTGGACTCGGTGCAGACCGTCGCCTCGCCCGAGATCGATGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGC
TGCTCGTCGGCCATGTCACGAAGGACGGCGCGATCGCCGGGCCGCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGCCACGCCCGGCTCCGCCTGGTCCGCGGCGTCAAGAACCGTTACGGGGCGACCGATGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTGACCCGGCGCGACGTGGCGGTGC
CGGGCACCTGTCTGACGGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCCGAGGTGCAGGCGCTCACGGTCGACTCCCAG
ATCCCTTCACCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCACCGAGCCGGCGGCCGACC
TCGCGATCGCGCTCGCGCTGGCCAGTGCCGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGAGTCCAGCGGAGACTGGCCGAGGCACACCGTCTCGGCTTCACCCACGCCTT
GGTACCGACCGACCCGGGAAGGGTTCCTTCGGGTATGAAGGTCACAGAAGTCGCCGACATGGGGGATGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGGCAGGAGGCGCCGCAGCCTCGTCAGGAAGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(85-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

95.772

0.416
  radA Streptococcus pneumoniae Rx1

42.605

95.772

0.408
  radA Streptococcus pneumoniae D39

42.605

95.772

0.408
  radA Streptococcus pneumoniae R6

42.605

95.772

0.408
  radA Streptococcus pneumoniae TIGR4

42.605

95.772

0.408
  radA Streptococcus mitis SK321

44.056

90.698

0.4
  radA Streptococcus mitis NCTC 12261

44.056

90.698

0.4