Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   STRPST75_RS32985 Genome accession   NZ_LR881952
Coordinates   7349681..7350700 (+) Length   339 a.a.
NCBI ID   WP_164234967.1    Uniprot ID   -
Organism   Streptomyces sp. KY70 isolate Streptomyces sp. KY70     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7344681..7355700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRPST75_RS32965 (STKY70_7158) - 7344806..7345891 (+) 1086 WP_018514882.1 ABC transporter substrate-binding protein -
  STRPST75_RS32970 (STKY70_7159) - 7345978..7347609 (+) 1632 WP_202590310.1 sugar ABC transporter ATP-binding protein -
  STRPST75_RS32975 (STKY70_7160) - 7347606..7348580 (+) 975 WP_128852351.1 ABC transporter permease -
  STRPST75_RS32980 (STKY70_7161) - 7348577..7349623 (+) 1047 WP_030566481.1 ABC transporter permease -
  STRPST75_RS32985 (STKY70_7162) cytR 7349681..7350700 (+) 1020 WP_164234967.1 LacI family DNA-binding transcriptional regulator Regulator
  STRPST75_RS32990 (STKY70_7163) - 7350731..7351825 (+) 1095 WP_202590309.1 aldose epimerase family protein -
  STRPST75_RS32995 (STKY70_7164) - 7351935..7353938 (+) 2004 WP_030566475.1 TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36916.96 Da        Isoelectric Point: 6.5090

>NTDB_id=1012433 STRPST75_RS32985 WP_164234967.1 7349681..7350700(+) (cytR) [Streptomyces sp. KY70 isolate Streptomyces sp. KY70]
MGVSLKDVAQRAGVSIKTVSNVVNNYQHVTPKMRAKVQQAIDELGYRPNLTARHLRKGRTGIIALAVPEFGNPYFAELAG
EVVDAAARHDYTVLVDHTGGLREKELLVSQGFRSHVIDGLILSPIHLETEDLMARTETAPLVLLGEREYEAPYDHIAIDN
VAAAREAVAHLIALGHRRIAFLGSRTGQERQPAHLRLRGWREELAASGITPDESLVVVTDGYGREDGAAAMASLLDRGEQ
PDAVFAYNDMIAIGAMRTITERGLTIPGDIAVVGFDDIEESRYGTTTLTTIAPDKAAIARLAVDSLVERLAGTPVAEPRR
PRPGYRLVVRESTTPRPSR

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=1012433 STRPST75_RS32985 WP_164234967.1 7349681..7350700(+) (cytR) [Streptomyces sp. KY70 isolate Streptomyces sp. KY70]
GTGGGCGTCAGCCTCAAGGACGTAGCTCAACGGGCGGGCGTGTCCATCAAGACCGTGTCGAACGTGGTGAACAACTACCA
GCACGTCACCCCCAAGATGCGCGCCAAGGTCCAGCAGGCCATCGACGAGCTCGGCTACCGGCCGAACCTCACCGCCCGCC
ATCTGCGTAAGGGCCGCACCGGCATCATCGCGCTGGCCGTCCCCGAGTTCGGCAACCCGTACTTCGCGGAGCTCGCCGGT
GAGGTCGTCGATGCCGCCGCCCGGCACGACTACACGGTGCTGGTCGACCACACCGGGGGCCTGCGCGAGAAGGAGCTGCT
GGTCAGCCAGGGGTTCCGGTCCCATGTCATCGACGGGCTCATCCTCAGCCCCATCCACCTGGAGACCGAGGACCTGATGG
CCCGTACGGAGACAGCACCGCTGGTGCTGCTGGGAGAACGGGAGTACGAGGCCCCGTACGACCACATCGCCATCGACAAC
GTGGCCGCCGCCCGCGAGGCCGTCGCCCACCTCATCGCCCTCGGCCACCGCCGGATCGCCTTCCTCGGCTCCCGTACCGG
CCAGGAACGCCAGCCCGCCCACCTGCGGCTGCGCGGCTGGCGCGAGGAGCTGGCCGCCTCCGGCATCACCCCCGACGAGT
CCCTCGTCGTCGTCACCGACGGCTACGGGAGGGAGGACGGCGCCGCCGCCATGGCCTCGCTCCTCGACCGTGGCGAGCAA
CCCGACGCCGTCTTCGCGTACAACGACATGATCGCCATCGGCGCCATGCGCACCATCACCGAGCGCGGCCTCACCATCCC
GGGCGACATCGCCGTCGTCGGCTTCGACGACATCGAGGAGAGCCGGTACGGGACCACCACCCTCACCACCATCGCGCCCG
ACAAGGCGGCCATCGCCCGGCTCGCCGTCGACAGCCTCGTCGAACGCCTCGCCGGAACCCCGGTCGCCGAACCCCGGCGG
CCCCGCCCCGGCTACCGCCTCGTCGTCCGCGAATCCACCACGCCCCGCCCGTCCCGCTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-333)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.337

100

0.369