Detailed information NTG1012301

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IHP11_RS04885
• Genome accession: NZ_LR881940
• Coordinates: 1018878..1019870 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 2015-01-2097
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1013878..1024870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHP11_RS04855 (QREC_QREC_00975)	ispD	1013939..1014649 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IHP11_RS04860 (QREC_QREC_00976)	ispF	1014649..1015128 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IHP11_RS04865 (QREC_QREC_00977)	truD	1015125..1016174 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IHP11_RS04870 (QREC_QREC_00978)	surE	1016155..1016916 (+)	762	WP_032237184.1	5'/3'-nucleotidase SurE	-
IHP11_RS04875 (QREC_QREC_00979)	pcm	1016910..1017536 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IHP11_RS04880 (QREC_QREC_00980)	nlpD	1017721..1018815 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IHP11_RS04885 (QREC_QREC_00981)	rpoS	1018878..1019870 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IHP11_RS04890 (QREC_QREC_00982)	ygbN	1019964..1021328 (-)	1365	WP_000104441.1	GntP family transporter	-
IHP11_RS04895 (QREC_QREC_00983)	ygbM	1021417..1022193 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
IHP11_RS04900 (QREC_QREC_00984)	ygbL	1022198..1022836 (-)	639	WP_001278994.1	aldolase	-
IHP11_RS04905 (QREC_QREC_00985)	otnK	1022833..1024095 (-)	1263	WP_032237187.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1012301 IHP11_RS04885 WP_000081550.1 1018878..1019870(+) (rpoS) [Escherichia coli isolate 2015-01-2097]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1012301 IHP11_RS04885 WP_000081550.1 1018878..1019870(+) (rpoS) [Escherichia coli isolate 2015-01-2097]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715